Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 291 / 3e-94 Major facilitator superfamily protein (.1.2.3) AT3G05150 283 / 3e-91 Major facilitator superfamily protein (.1) AT4G04750 280 / 9e-90 Major facilitator superfamily protein (.1) AT5G18840 276 / 3e-88 Major facilitator superfamily protein (.1) AT2G48020 275 / 4e-88 Major facilitator superfamily protein (.1.2) AT3G05165 272 / 8e-87 Major facilitator superfamily protein (.1.2.3.4.5) AT5G27350 266 / 2e-84 SFP1 Major facilitator superfamily protein (.1) AT3G20460 264 / 2e-83 Major facilitator superfamily protein (.1) AT5G27360 258 / 3e-81 SFP2 Major facilitator superfamily protein (.1) AT3G05160 256 / 2e-80 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018957 [exp] 703 / 0 AT4G04750 326 / 2e-106 Major facilitator superfamily protein (.1) Lus10033795 [exp] 590 / 0 AT4G04750 360 / 3e-120 Major facilitator superfamily protein (.1) Lus10000924 [exp] 392 / 1e-133 AT4G04750 371 / 1e-124 Major facilitator superfamily protein (.1) Lus10002258 [exp] 365 / 8e-120 AT1G54730 319 / 2e-101 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 303 / 1e-98 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029629 [exp] 277 / 9e-89 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029962 [exp] 271 / 9e-86 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 266 / 3e-84 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029960 [exp] 266 / 9e-84 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027500 [exp] 298 / 6e-97 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.013G027700 [exp] 295 / 9e-96 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 292 / 1e-94 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 288 / 6e-93 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 287 / 3e-92 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.014G136600 [exp] 276 / 2e-88 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 276 / 4e-88 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 271 / 2e-86 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 259 / 1e-81 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 246 / 1e-76 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033815 pacid=23172845 polypeptide=Lus10033815 locus=Lus10033815.g ID=Lus10033815.BGIv1.0 annot-version=v1.0 ATGACTCATGAGGAGTATTGTACGCAGGTGGGATATTCGTCACCGGTGGAGTATGCAATTGTGGAAGAATTGGGTCTCTCAGTTGCAGAGGTATGGTACT CGGTGTTTGGATCAATGATGATAGTTGGGGGGCTTTTTGCTGCCGTCAGTGGTGGAAAGATTGCAGAAGTAATTGGGAGAAAACTTACACTGGTGGGTGT GGCTGGATTGTACGTTGTTGGATGGCTTACCATTGGATCTGCAAAGGGTGCTTGGCAACTTGACCTTGGGAGACTGGTTCAGGGAATTGGATCAACCTTG ACGCTTTACCTGACACCTCTTTATGTAGCAGAAATATCACCCAAGAATGTCAGGGGAACTGCTGTATCCATGTCTCAGCTGACAATCATGGTCGGCATTT CATTCACATTCATAGTTGGTTCCGTAATCAACTGGCGTACCATGGCACTAATTGGAGCGGCTTCAGGTGTACTGCAGTTGTTTCTTACACTTTTTGTACC AGAATCTCCTAGGTGGCTGGCTAAAACTGATAAGGGCGAGCAGTTTGAAGCTGCCTTGCTGCGGCTGAGAGGAGTAAACGAAGATATTTCTTGGGAAATA GAGGAAATCAAGGTGACAGGATTAAAATTTGTTATGGAGAGACCGAGTTTTCCAGTTGGTTTTGACAGAACAATGAAGAAAGTTTGGTTTATGTTGAATC TCAGGAGTATACCAAAACAATTCAAAGAATTTCTCAGGATAGCAGCTTCTTTAGTCTGTTTCAGAAGCAGTATCTCAAACACTATAGGGTTCTTGGCAGT ATCAGCTGCTCAGCTCACTGGGGCTATATTAACTACAGCATTGCTGGATAGATACGGAAGAAGACCACTTTTACTGGCGTCAGCTTTGGGGACATGTTCT GCTAGTTTGCTCACTGCACTCTCTTACATCCTAAAGGGCTATCAGGGGTTGAGTGAAGACACTCCTGCACTAGCACTCCTAAGTATACTGATATTCATGG GGACTATGTCACTTGGGAATGGAATTTCCTGGATCATAGTTGCGGAGATATTTCCACAGAACATAAAAGGTGCAGCAGGGAGCATGTGCATTCTGTCCAG CAACATCTCCTCTCTGCTAGTGACACTCTCCTTCCAGTCTTTGCTCCAATGGAGCTCTTCAGGGACGTTCTTGATATATGCAGGTGTAAGTGCTGTGGCA ATCATATTTGTGGCCAAGTTGGTTCCTGAAACTAAAGGAAGAACTCTGGAAGAAATCCAATCCTCTTTTACCCACAAATGA
AA sequence Show only first row Show all	>Lus10033815 pacid=23172845 polypeptide=Lus10033815 locus=Lus10033815.g ID=Lus10033815.BGIv1.0 annot-version=v1.0 MTHEEYCTQVGYSSPVEYAIVEELGLSVAEVWYSVFGSMMIVGGLFAAVSGGKIAEVIGRKLTLVGVAGLYVVGWLTIGSAKGAWQLDLGRLVQGIGSTL TLYLTPLYVAEISPKNVRGTAVSMSQLTIMVGISFTFIVGSVINWRTMALIGAASGVLQLFLTLFVPESPRWLAKTDKGEQFEAALLRLRGVNEDISWEI EEIKVTGLKFVMERPSFPVGFDRTMKKVWFMLNLRSIPKQFKEFLRIAASLVCFRSSISNTIGFLAVSAAQLTGAILTTALLDRYGRRPLLLASALGTCS ASLLTALSYILKGYQGLSEDTPALALLSILIFMGTMSLGNGISWIIVAEIFPQNIKGAAGSMCILSSNISSLLVTLSFQSLLQWSSSGTFLIYAGVSAVA IIFVAKLVPETKGRTLEEIQSSFTHK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	0	1
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	2.0	0.9446
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	2.0	0.9410
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	2.6	0.9494
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	3.9	0.9420
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	5.7	0.9165
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10010190 [exp]	5.8	0.9164
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	5.9	0.9347
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	8.0	0.9299
AT1G09310			Protein of unknown function, D...		Lus10010904 [exp]	8.1	0.9209
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10041361 [exp]	9.5	0.8953

Compare expression of checked genes

Lus10033815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.