Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54710 810 / 0 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 659 / 0 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT5G54730 294 / 1e-88 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT5G05150 53 / 5e-07 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT3G62770 50 / 4e-06 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT2G40810 50 / 5e-06 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 49 / 6e-06 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018960 [exp] 1253 / 0 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10002257 [exp] 988 / 0 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10000925 [exp] 963 / 0 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10035835 [exp] 428 / 2e-139 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10036618 [exp] 418 / 6e-135 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10029900 [exp] 53 / 5e-07 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 51 / 2e-06 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10036577 [exp] 50 / 3e-06 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 48 / 2e-05 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028200 [exp] 922 / 0 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.005G040300 [exp] 909 / 0 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.001G417000 [exp] 455 / 1e-148 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.011G132700 [exp] 455 / 4e-148 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.019G062800 [exp] 52 / 1e-06 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.014G132300 [exp] 51 / 3e-06 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 48 / 2e-05 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 45 / 0.0001 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 45 / 0.0002 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12490 [flax] [poplar] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Lus10033817 pacid=23172757 polypeptide=Lus10033817 locus=Lus10033817.g ID=Lus10033817.BGIv1.0 annot-version=v1.0 ATGAAGAATAGCAGCAAAGGAAGCAACAGCACTAAGAGCAGCAGCAACAATGGCTTCCTTCCGAGCTCTCTGAAATTCATTTCCTCCTGTATCAAAACTG CTTCTTCCGGCGTTCGGTCTGCTAGCGCCTCCGTTGCCGCTTCGATCTCCACCGAAAATCAAGGCGGCATCAGGGACCAGGTTCTTTGGGCCTCATTTGA TAAGCTACAGCTTAGTCCATCCTCCTTCAGAAACGTTCTTTTACTTGGGTACTCTAATGGCTTCCAAGTCATTGATGTGGACGATGCCTCTGGCGTTACT GAGCTTGTGTCAAGAAGGGATGATCCAGTTACTTTTCTTCGTATGCAGCCACTCCCAGCTAAGGCTGAGGGCTGTGAAGGATTTAGAGCTGCTCATCCTT TGCTCCTAGTAGTTGCTTGTGATGAATCCAAAAGCCCTGCACTTGTTATCAATGGAAAAGATGGATTGGTCAAGGACGGTATCATTGAGCATCAATCAGG AGCCTTTGCACTCAATCCCACCTTAGTCCGTTTTTATTCTCTGAAATCCCACAATTACGTTCACGTTCTAAGATTCCGTTCACCTGTATTCATGGTTAGA TGCAGTCCTCAGATAGTGGCTGTCGGTCTTGCCACACAAATATACTGCTTTGATGCTCTCACTCTAGAGAACAAGTTCAGTGTGCTCACCTATCCTGTCC CTCAATTGGTCAGCCAAGGAGGCATTGGGGCTAACACTGGATATGGGCCAATGGCAGTTGGTCCAAGGTGGTTAGCGTATGCATCTGACAATCCATTGGT ATCCAATACTGGCCGCTTAAGTCCACAGAGTCTTACACCTACCCTAGGTGTAAGTCCATCAACTTCGCCAGGCAATGGTAACTTAGTAGCTCGTTATGCC ATGGAATCTAGCAAGCAGCTTGCTACTGGACTGGTGAGTTTAGGTGACATGGGCTACAAGACATTGTCTAGATACTGTCAAGATTTTATCACTGATGGTT CTGGATCACCTGTCTCGCCCAATACTGGCTGGAAAGTTGGACGAGCTGCAACTCATTCCCCAGAAGCTGATACTGCTGGAATGGTTGTTGTGAAAGATTT TGTCTCAAGAGCTGTGATTTCACAATTTAGAGCTCATACAAGTCCCATTTCTGCTCTATGCTTTGATCCGAGCGGTACACTATTGGTTACTGCATCAATT CATGGAAACAATATAAATATATTTCGAATCATGCCCTCCTCTGTTCATGGTGGATCTGGTGCAAAGAGTTACAATTGGAGCTCTGCTCATGTGCACCTTT ACAAGCTTCATCGGGGAATAACTTCAGCAGTGATACAGGATATATGCTTTAGCAGTTATAGTCAGTGGGTTGCCATAATTTCATCTAGAGGCACCTGCCA TATTTTTGCACTTTCGCCATTTGGTGGTGCGAATGTTCTCCAAATACAAAACTCTGATGTAGACGGTCCCATCCTATTACCAGTTTTATCTCTACCATGG TGGTCCACTCCTTCATTCCAAGTGAACCAGCAGATTTTTTCTGCATCTCCACCTGCTCCTGTTACTCTATCTGTGGTGGCTCGAATAAAGGATAACCACT CCGGCTGGCTTAACACAGTTAGCAATGCTGCATCATCTGCTGCAGGAAAGGCCTCGCTACCATCTGGTGCTCTTGCAGCAGTCTTTCATAACTGCGTACC ACGAGATCTGCAACCTTCACATTTGAAGAAAGTTAATGCCATGGAGCACCTGGTGTCATATACCCCTTCTGGACATGTAGTTCAATACAAATTGGTGTCT TCAGTTGGGGCAGAAACCAGTGAAGGTACACCAAGAGTTGGACTGGCATCTTCACTTCAGACTCCAGATGAAGAACTACACTTGAAGACTGAATCTGTTC AGTGGTGGGATGTTTGCAGAAGAGCCGATTGGCCAGAAAGGGAGGAATACATTTCTGGTCTTGCTCACAGCAGCCAAGAAAATGCAGATATGGCCATGCA TACTTCTGAGTTTGAAGATAATGGGACTGGGATTGCGAGGGCGCGGCCATGGATACTTCTGAGTTTGAAGATAATGAGGCTGGGATTGCGACGGCCTCTG ATTTTATGGATACTGTTACACAAAATATGGACTTGGTAA
AA sequence Show only first row Show all	>Lus10033817 pacid=23172757 polypeptide=Lus10033817 locus=Lus10033817.g ID=Lus10033817.BGIv1.0 annot-version=v1.0 MKNSSKGSNSTKSSSNNGFLPSSLKFISSCIKTASSGVRSASASVAASISTENQGGIRDQVLWASFDKLQLSPSSFRNVLLLGYSNGFQVIDVDDASGVT ELVSRRDDPVTFLRMQPLPAKAEGCEGFRAAHPLLLVVACDESKSPALVINGKDGLVKDGIIEHQSGAFALNPTLVRFYSLKSHNYVHVLRFRSPVFMVR CSPQIVAVGLATQIYCFDALTLENKFSVLTYPVPQLVSQGGIGANTGYGPMAVGPRWLAYASDNPLVSNTGRLSPQSLTPTLGVSPSTSPGNGNLVARYA MESSKQLATGLVSLGDMGYKTLSRYCQDFITDGSGSPVSPNTGWKVGRAATHSPEADTAGMVVVKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASI HGNNINIFRIMPSSVHGGSGAKSYNWSSAHVHLYKLHRGITSAVIQDICFSSYSQWVAIISSRGTCHIFALSPFGGANVLQIQNSDVDGPILLPVLSLPW WSTPSFQVNQQIFSASPPAPVTLSVVARIKDNHSGWLNTVSNAASSAAGKASLPSGALAAVFHNCVPRDLQPSHLKKVNAMEHLVSYTPSGHVVQYKLVS SVGAETSEGTPRVGLASSLQTPDEELHLKTESVQWWDVCRRADWPEREEYISGLAHSSQENADMAMHTSEFEDNGTGIARARPWILLSLKIMRLGLRRPL ILWILLHKIWTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	0	1
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	1.0	0.9003
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	1.4	0.8701
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	2.2	0.8565
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	3.5	0.8430
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	3.7	0.8430
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	4.0	0.8579
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	5.2	0.8628
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	7.7	0.7876
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	8.9	0.8269
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	9.9	0.8273

Compare expression of checked genes

Lus10033817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.