Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54710 92 / 1e-20 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 64 / 5e-11 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018960 [exp] 475 / 4e-161 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10002257 [exp] 228 / 7e-68 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10000925 [exp] 215 / 4e-63 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10035835 [exp] 53 / 2e-07 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10036618 [exp] 51 / 9e-07 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028200 [exp] 234 / 4e-70 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.005G040300 [exp] 224 / 2e-66 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.011G132700 [exp] 61 / 4e-10 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 56 / 2e-08 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12490 [flax] [poplar] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Lus10033818 pacid=23172810 polypeptide=Lus10033818 locus=Lus10033818.g ID=Lus10033818.BGIv1.0 annot-version=v1.0 ATGAGCCCCTGGAGAACACCTCTCTGGCAGAAATCTAAGGTTTACTTCTATGCAATGACTGGCATTGAAGCTGATAAGAAGTATGTTGCTGAAGATCATT ACAGTGGAGAGATTGAAGTGGAGAAGGTTCCAGTTCATGAAGTTGAAAGTAGGCGAAAGGATTTATTGCCTGTTTTTGACCATTTTCACAGGGCTGTTGG TTGGAATGATCGGGAACTTCGGAGGGAAAGATCAACTTTTTCTACAGGTTCCTATGGAGTTAATCAGTTGGCTGTTCCTGCAGCTTCACAGCAGCCTAAG ACGGTTTCATCTAGTTCTGGTGCAAACTCGGATGGTGGGTCTTCGGCAAACTTGTATATATCTGCTCAGCATGTTCATGGGAAATTTGGAGGAAGGGGAG GGATTTCTGGTTTGGCATCCCCACTTCTGTATCAAAGCCCAACTAACAGTAACAGCGGTCTAATTCCGTTTCAGCAGACTCCTATGAGTATTTCTCCTGC TGAAGATAGTAACTCTATGAATAGTGATGTAGCATCTTTAACACATGGCTCCCCCTCTCCTGGAAGAAATATGGGAAACGAAGGGCAGTCATCAAATGGT GTTCTGACCAGTGAATCCTCACACGCAAGTTCCAATCGTTCGGACTTGAGCGCAAACATTATAGATGAGGGGATGGTTAATGAGTCCCCAGATTTTGAGC AGCTTTTCCAGGAAGGCTACTGTAAAGTGGCAACCCTGTCTGAACGTGGCGGAGCAGACAAAATGGCCAGTCCTCGTGAACCAGAGCCAGAAGACCCAGA TGAAGAGGAGGACGATGATATGCTAGGAGGGGTTTTTGCTTTCTCAGAGGAAGGTAAACCATCTCCAGCTTTTGTACTTCTGTTGAAACATCATTTGGCT AATGGTGCGAATCTTGTTCGTCCCGTGGCTGGCTGA
AA sequence Show only first row Show all	>Lus10033818 pacid=23172810 polypeptide=Lus10033818 locus=Lus10033818.g ID=Lus10033818.BGIv1.0 annot-version=v1.0 MSPWRTPLWQKSKVYFYAMTGIEADKKYVAEDHYSGEIEVEKVPVHEVESRRKDLLPVFDHFHRAVGWNDRELRRERSTFSTGSYGVNQLAVPAASQQPK TVSSSSGANSDGGSSANLYISAQHVHGKFGGRGGISGLASPLLYQSPTNSNSGLIPFQQTPMSISPAEDSNSMNSDVASLTHGSPSPGRNMGNEGQSSNG VLTSESSHASSNRSDLSANIIDEGMVNESPDFEQLFQEGYCKVATLSERGGADKMASPREPEPEDPDEEEDDDMLGGVFAFSEEGKPSPAFVLLLKHHLA NGANLVRPVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	0	1
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	1.4	0.9107
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	2.0	0.8973
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	3.9	0.8898
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	7.1	0.8839
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	7.2	0.8699
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10043431 [exp]	7.2	0.8364
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	8.5	0.8800
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	8.7	0.8857
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	13.4	0.8747
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	14.3	0.8651

Compare expression of checked genes

Lus10033818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.