Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59400 221 / 2e-71 GUN4 GENOMES UNCOUPLED 4, enzyme binding;tetrapyrrole binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018961 [exp] 339 / 2e-117 AT3G59400 229 / 1e-74 GENOMES UNCOUPLED 4, enzyme binding;tetrapyrrole binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030100 [exp] 244 / 6e-80 AT3G59400 241 / 1e-78 GENOMES UNCOUPLED 4, enzyme binding;tetrapyrrole binding (.1) Potri.007G128200 [exp] 241 / 3e-79 AT3G59400 208 / 9e-67 GENOMES UNCOUPLED 4, enzyme binding;tetrapyrrole binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05419 [flax] [poplar] GUN4 GUN4-like
Representative CDS sequence Show only first row Show all	>Lus10033819 pacid=23172760 polypeptide=Lus10033819 locus=Lus10033819.g ID=Lus10033819.BGIv1.0 annot-version=v1.0 ATGGCTACCAATTCTCTCCATTCCCTCCACCACCGCCTCACCAATCTCCTCCACCACCCTTCTTCCTCCTCCTCCGACTCCCTCCCTCCCTTCTCCTCCA CCTTCCTCAAACCCACCTCCCCCGCCACATCATCATCCATTTCCCTTTCCACCACCACCACATCCGCCGCAGCCGGCGGCGCCGCTTTCTCCATCTCCAC ATCACCACCACCATCAACAACCACAACCCAAAACACATTCACTCTAGACCTCCTCCGCCAACACCTCGCCGCCCAAGACTTCCGCCAAGCAGACGAGGAG ACCCGCCGCCTCCTCATCGTCCTCGCCGGGGAAGCCGCCGTCATACGCGGCTACGTCTTCTTTTCCGAGGTACAGTTCATCTCCCCTGAGGACTTGAAAG CGATAGACGAGCTGTGGAAAGAGCACAGCGGCGGGAAATTCGGGTACAGCGTCCAGAAGAAGATTTGGGTGAACAAGTACTGTAAGAGGGATTTCACCAA ATTCTTCATTAGGGTTGGGTGGATGAAGAAATTGGAGAGTAGTGAAGTCGAGCAGTACAATTACAGAGCGTTTCCAGGGGAGTTCATCTGGGAGCTCGGG GATGATACCCCTGAGGGACATTTGCCTCTCACGAATGCGCTTAGAGGAACTCGGTTGCTTGAATGTGTTCTTAATCACCCTGCTTTTGAAGATAGTGATG AGGGTGGTGATGATGGGGGAGATGATGAATTGATGGGGAGGAGTGGTGGGTTGTTGATGGGATTGAAGAAGGTTGGTTCTTCGTCGTCGACTGGTACTGC TGCAGGTAGTGGTTCAGGGGCTGAAGATTCGAGCAAGAAGGTTTTCAAGACGGATTACAGCTTTTAG
AA sequence Show only first row Show all	>Lus10033819 pacid=23172760 polypeptide=Lus10033819 locus=Lus10033819.g ID=Lus10033819.BGIv1.0 annot-version=v1.0 MATNSLHSLHHRLTNLLHHPSSSSSDSLPPFSSTFLKPTSPATSSSISLSTTTTSAAAGGAAFSISTSPPPSTTTTQNTFTLDLLRQHLAAQDFRQADEE TRRLLIVLAGEAAVIRGYVFFSEVQFISPEDLKAIDELWKEHSGGKFGYSVQKKIWVNKYCKRDFTKFFIRVGWMKKLESSEVEQYNYRAFPGEFIWELG DDTPEGHLPLTNALRGTRLLECVLNHPAFEDSDEGGDDGGDDELMGRSGGLLMGLKKVGSSSSTGTAAGSGSGAEDSSKKVFKTDYSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10033819 [exp]	0	1
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10023321 [exp]	1.4	0.9397
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Lus10022478 [exp]	2.2	0.9297
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	4.2	0.9342
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	4.9	0.9314
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	6.0	0.9313
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10008594 [exp]	6.0	0.9241
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10038575 [exp]	6.5	0.9269
AT2G45290			Transketolase (.1)		Lus10031128 [exp]	6.9	0.9245
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	7.9	0.9257
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10015399 [exp]	8.1	0.9175

Compare expression of checked genes

Lus10033819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.