Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77670 172 / 2e-49 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 69 / 1e-12 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G80360 60 / 9e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018962 [exp] 486 / 9e-172 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 177 / 5e-52 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10004089 [exp] 172 / 2e-49 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023080 [exp] 83 / 5e-17 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10032388 [exp] 82 / 7e-17 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10011479 [exp] 53 / 2e-07 AT1G80360 497 / 2e-177 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023117 [exp] 51 / 1e-06 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G124100 [exp] 394 / 7e-136 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 175 / 3e-50 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 167 / 3e-47 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175600 [exp] 101 / 6e-25 AT1G77670 395 / 1e-138 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 77 / 4e-15 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.001G177000 [exp] 56 / 1e-08 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10033820 pacid=23172882 polypeptide=Lus10033820 locus=Lus10033820.g ID=Lus10033820.BGIv1.0 annot-version=v1.0 ATGCAAGACATCGTTAGAACATTTGAAAACGGAAGCAAGCGGATGGATAGCTGTAACGTGGAAGAAACGGAGAAAAAGCTACGGGGAGTTGCCAGGACGT TCGCTCCTTCCCCAATTCAAGAGCTTTCCCACTTAGCTCAACGATGCAATGCGATCAACCTTGCTGAAGGCTTCCCTGATTCCCCGCACCTCCGCATGTA CAAGGCTACTTGTGTGAAGGAAATGTTCGGATTAGAAGTTGACCCTGATACTGATATAGCCATTTGTTGCGGCCAAAGTGAGGCCTTTGCAGCTTCAATG TTTGCTATAATAGGCCCTGGCGATGAGGTTGTGTTGTTTGATCCTTGTTATCAAACTTATGAAGCTTGCATTTGGTTGGCCGGGGGAACTCCTGTGTACG TCGCTCTTGACCCGCCTTTTTGGGCATTGGATGCTGAGAAATTCACGAGTTCGTTCACTCATCGAACAAAAACTGAGATGTTGAACAGGAGAACTTATAC ACCCATGGCAGAAATTTGCTATGATTTCTATACTGATGGAATCAGGAGAAACTTGTACACCAGACAACGCACTATCATCACATCTTCACTATCAAAGACT TTTGATGTCACAGGATGGATGATGGGTTGGGCAATCGCTCATCCCGCCTTCGCCTCTGCTATAAGAAACATTCATGTTAAGCTTACAGATTCTGCTCCAG CATCTTTCCAGGAAGCTGCACTGACTGCTTTGAGAAGTGGCTCTGGGTACTTTGAATCGCTCAGGAGAGACTATGAATCGGAAAGCGACTACATCGTGCA GTTGCTTGCGAGGATAGGTTTGGAGATTCATTTTAAACCTCATGGATCATTCTTCTTATTCGTTGAACTTTCGGAAGCTTCTCCTCTTTCAGATGTAGAA TATGTTAAGGAGCTAATAGAACAAGCCGAGATGGTGGCAGTACCAGGTCGCGGGTTCTTCCATGACAATTTGGTACCAGACGAACTGCCCCGCAGTGGCT CTGATTATCAGAAGAGGTACATTAGGTTTGCCTTATGCAAAAGTAGTGCAACTTTGGAAGCGGCATCCAACGACTTCGGTGGGAAAATTTTTTTGTTGGC AAGATTAAATCGGAAATTACCTAAATAA
AA sequence Show only first row Show all	>Lus10033820 pacid=23172882 polypeptide=Lus10033820 locus=Lus10033820.g ID=Lus10033820.BGIv1.0 annot-version=v1.0 MQDIVRTFENGSKRMDSCNVEETEKKLRGVARTFAPSPIQELSHLAQRCNAINLAEGFPDSPHLRMYKATCVKEMFGLEVDPDTDIAICCGQSEAFAASM FAIIGPGDEVVLFDPCYQTYEACIWLAGGTPVYVALDPPFWALDAEKFTSSFTHRTKTEMLNRRTYTPMAEICYDFYTDGIRRNLYTRQRTIITSSLSKT FDVTGWMMGWAIAHPAFASAIRNIHVKLTDSAPASFQEAALTALRSGSGYFESLRRDYESESDYIVQLLARIGLEIHFKPHGSFFLFVELSEASPLSDVE YVKELIEQAEMVAVPGRGFFHDNLVPDELPRSGSDYQKRYIRFALCKSSATLEAASNDFGGKIFLLARLNRKLPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10033820 [exp]	0	1
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	4.9	0.8847
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	4.9	0.8843
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	6.2	0.8836
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10008884 [exp]	6.3	0.8689
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	7.7	0.8410
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	20.2	0.8507
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	20.9	0.8702
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	21.3	0.8403
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	23.1	0.8583
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	23.8	0.8325

Compare expression of checked genes

Lus10033820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.