Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54680 187 / 3e-58 unknown protein AT5G27290 177 / 6e-53 unknown protein AT1G56180 52 / 2e-07 unknown protein AT2G21960 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018965 [exp] 559 / 0 AT1G54680 187 / 8e-59 unknown protein Lus10033822 [exp] 174 / 4e-52 AT5G27290 494 / 3e-177 unknown protein Lus10018966 [exp] 173 / 3e-51 AT5G27290 479 / 8e-171 unknown protein Lus10005779 [exp] 52 / 2e-07 AT2G21960 465 / 6e-166 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029000 [exp] 186 / 1e-56 AT5G27290 451 / 5e-160 unknown protein Potri.010G171400 [exp] 54 / 6e-08 AT1G56180 500 / 6e-178 unknown protein Potri.005G084400 [exp] 49 / 2e-06 AT2G21960 449 / 8e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033821 pacid=23172808 polypeptide=Lus10033821 locus=Lus10033821.g ID=Lus10033821.BGIv1.0 annot-version=v1.0 ATGGATAATGATCGGCGTCGTTTCATCTCATTCTGGGTTCTATTTATTTATTTGCGACCTGTCGGAGGAAGGAATCTGACTAAGGTGGAAATGAACTTAT CAGCTCCGACCGGCAAGAGGGTTCCATCGGACTTCGCTGAACGGCGACGTCGAGGGTTGAAAAGGGTGGACAGAGAGCTGTCAAGGGGGAATTTTGAGAC CGCCCTTTCTCTAGTCAAGCAATTGCAGAAGCAACGAAGTCTCCTGTGCGGATTCGGTGCTGCGAAACAGGTTCCGAAGAAATCATCAGCACTTGAAGGA CTCGAATTTGATGGCTTAGATACAGCGTCAGTTGGAGAGTTGGTGGATTCAGTTCTGGATTCAATACACAACAATCCTGGCCATTTCCCATTGGTAAACG AGGTTGAGAGCAGGAGCCAGAGGAACTCTGAAGAAGATCATTTGCTGTGCCTGCAACATGAAGCTGGTCATTTCCTTGTCGGCTACTTAATTGGAGCATT ACCCAAGAAATACCAAGTGCCAAACTTGGAAGATTTGAGGCGTAACGACGTTGTCAAAGCCAAAGTAGAGTTTTTAGGATTTGAGTTCCTAAGAGAAGTT TGGGCTGCTGAGATGCTCAAAAGAAACAGTCAAATTAAAGCAAAGGGAACTGATGCTGTGGCGAATAGAGGATCGATTTCATCAAAGACTCTGAATTCAT TTTCATGCATAATCTTAGGAGGCTTAGTTGCAGAGTATCTGGCATTTGGACATGCAGAAGGCCACCTTGCTGATCTCCAAAAGCTCCACAATACAATCAA GTGGCTAGGAATGTCAGAGAGCACCGCGAGGTTTCAAATGAAATGGGCTGCACTAAACACCATCTTCATCCTTGACAACCATCAACAAGCCAGGCAAAGG TTGGTAGAAGCCATGGCAGAAGGTCGATCAGTAGGCTTCTGCATTGATGCAATAGAGACTTCTCTCCACCATTAG
AA sequence Show only first row Show all	>Lus10033821 pacid=23172808 polypeptide=Lus10033821 locus=Lus10033821.g ID=Lus10033821.BGIv1.0 annot-version=v1.0 MDNDRRRFISFWVLFIYLRPVGGRNLTKVEMNLSAPTGKRVPSDFAERRRRGLKRVDRELSRGNFETALSLVKQLQKQRSLLCGFGAAKQVPKKSSALEG LEFDGLDTASVGELVDSVLDSIHNNPGHFPLVNEVESRSQRNSEEDHLLCLQHEAGHFLVGYLIGALPKKYQVPNLEDLRRNDVVKAKVEFLGFEFLREV WAAEMLKRNSQIKAKGTDAVANRGSISSKTLNSFSCIILGGLVAEYLAFGHAEGHLADLQKLHNTIKWLGMSESTARFQMKWAALNTIFILDNHQQARQR LVEAMAEGRSVGFCIDAIETSLHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54680			unknown protein		Lus10033821 [exp]	0	1
AT1G54680			unknown protein		Lus10018965 [exp]	1.0	0.9747
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	1.4	0.9560
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	1.7	0.9451
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	2.2	0.9151
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	3.7	0.8869
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10026513 [exp]	5.7	0.8840
AT2G38570			unknown protein		Lus10022733 [exp]	7.1	0.8814
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	7.2	0.8886
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	7.5	0.9018
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	8.7	0.9197

Compare expression of checked genes

Lus10033821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.