Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27290 478 / 5e-171 unknown protein AT1G54680 153 / 3e-45 unknown protein AT1G56180 90 / 3e-20 unknown protein AT2G21960 62 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018966 [exp] 596 / 0 AT5G27290 479 / 8e-171 unknown protein Lus10033821 [exp] 174 / 6e-52 AT1G54680 187 / 3e-58 unknown protein Lus10018965 [exp] 167 / 1e-49 AT1G54680 187 / 8e-59 unknown protein Lus10006532 [exp] 93 / 6e-21 AT1G56180 510 / 0.0 unknown protein Lus10005779 [exp] 76 / 2e-15 AT2G21960 465 / 6e-166 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029000 [exp] 492 / 9e-177 AT5G27290 451 / 5e-160 unknown protein Potri.010G171400 [exp] 87 / 4e-19 AT1G56180 500 / 6e-178 unknown protein Potri.005G084400 [exp] 65 / 9e-12 AT2G21960 449 / 8e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033822 pacid=23172894 polypeptide=Lus10033822 locus=Lus10033822.g ID=Lus10033822.BGIv1.0 annot-version=v1.0 ATGGGCATAGTTCTCTACTCCTTGGGAGTCTCGAGAATCAGCTGTTTCAGGTCCTGGAGATTGACAGCAGTAGGTTTAGAGCAAGTTGACAAGGAGCTTT CCATTGGAGACGAAAGAGCTGCTCTTTCTCTTGTTAGAGATTTGCAGGGAAAGCCCAATGGCCTCCGATGTTTCGGCGCTGCAAGGCAGGTGCCACAAAG GCTGTACACATTGGATGAGCTGAAGCTAAATGGGATTGAAGCGAGTTCTTTGCTATCTCCTGTGGATGGAACTCTTGGTTCTATCGAGAGATATCTGCAG GTTGCTGGTGTTGTTGGAGGAGTTGCAGCCTGGAATGCATTTGGGTTTACTTCTCAGCAGATATTTTACTTGTCTCTGGGGCTCTTGTTTATATGGACCT TGGATGCTGTGTCATTCAATGGAGGACTTGGCAGCTTAGTTCTTGACACAATTGGGCACAACCTCAGTCAGAAATATCACAACAGAGTCATTCAACATGA AGCTGGGCATTTCCTGGTTGCCTACTTAGTCGGGGTTCTTCCAAAGGGTTACACATTATCCAGCTTGGAAGCTCTGCAGAAGGAAGGATCTCTCAATGTC CAAGCTGGCACGGCTTTTGTGGATTTTGAGTTCGTTGAAGAAGTGAATTCAGGCAAAGTTTCCGCCACGACTCTCAACAGATTCTCATGCATAGCGCTAG CTGGTGTAGCAACTGAGTACATCTTGTATGGTTATTCAGAGGGAGGGCTTGCCGATATAAGCAAGTTGGACATGTTGCTTAAAGGGCTTGGTTTCACACA GAAGAAAGCAGATTCCCAGGTTAGATGGTCAGTTCTGAACACGATCTTGCTGCTGCGCCGCCATGGACAAGCTCGTGCCAAACTTGCTGACGCAATGTCA ATGCGCAAATCTGTAGGGGATTGCATTGGTGTTATAGAAGACAACATTGATGATGCAGATTTATAG
AA sequence Show only first row Show all	>Lus10033822 pacid=23172894 polypeptide=Lus10033822 locus=Lus10033822.g ID=Lus10033822.BGIv1.0 annot-version=v1.0 MGIVLYSLGVSRISCFRSWRLTAVGLEQVDKELSIGDERAALSLVRDLQGKPNGLRCFGAARQVPQRLYTLDELKLNGIEASSLLSPVDGTLGSIERYLQ VAGVVGGVAAWNAFGFTSQQIFYLSLGLLFIWTLDAVSFNGGLGSLVLDTIGHNLSQKYHNRVIQHEAGHFLVAYLVGVLPKGYTLSSLEALQKEGSLNV QAGTAFVDFEFVEEVNSGKVSATTLNRFSCIALAGVATEYILYGYSEGGLADISKLDMLLKGLGFTQKKADSQVRWSVLNTILLLRRHGQARAKLADAMS MRKSVGDCIGVIEDNIDDADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27290			unknown protein		Lus10033822 [exp]	0	1
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	1.0	0.9739
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	1.4	0.9618
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10000197 [exp]	2.0	0.9492
AT5G27290			unknown protein		Lus10018966 [exp]	2.4	0.9520
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	2.8	0.9427
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	3.9	0.9480
AT2G05310			unknown protein		Lus10001175 [exp]	4.6	0.9469
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	6.9	0.9478
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	8.5	0.9379
AT1G60230			Radical SAM superfamily protei...		Lus10000081 [exp]	8.7	0.9276

Compare expression of checked genes

Lus10033822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.