Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04970 197 / 6e-62 DHHC-type zinc finger family protein (.1.2) AT3G56930 62 / 1e-10 DHHC-type zinc finger family protein (.1.2) AT5G50020 54 / 3e-08 DHHC-type zinc finger family protein (.1.2) AT5G05070 53 / 7e-08 DHHC-type zinc finger family protein (.1) AT2G40990 53 / 8e-08 DHHC-type zinc finger family protein (.1) AT3G56920 52 / 1e-07 DHHC-type zinc finger family protein (.1) AT5G41060 51 / 3e-07 DHHC-type zinc finger family protein (.1.2) AT5G20350 51 / 4e-07 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G48760 50 / 5e-07 DHHC-type zinc finger family protein (.1) AT4G24630 50 / 6e-07 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018967 [exp] 246 / 7e-80 AT3G04970 437 / 3e-153 DHHC-type zinc finger family protein (.1.2) Lus10004149 [exp] 199 / 4e-61 AT3G04970 516 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10008037 [exp] 55 / 3e-08 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10012455 [exp] 52 / 1e-07 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10032009 [exp] 52 / 2e-07 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 52 / 2e-07 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 52 / 2e-07 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10010447 [exp] 52 / 2e-07 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 52 / 3e-07 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G041000 [exp] 191 / 2e-58 AT3G04970 520 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.016G025100 [exp] 55 / 2e-08 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 55 / 2e-08 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.002G065500 [exp] 54 / 4e-08 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G025200 [exp] 53 / 7e-08 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 53 / 9e-08 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 53 / 9e-08 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 53 / 1e-07 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G061800 [exp] 52 / 2e-07 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G027500 [exp] 52 / 2e-07 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10033823 pacid=23172802 polypeptide=Lus10033823 locus=Lus10033823.g ID=Lus10033823.BGIv1.0 annot-version=v1.0 ATGGGGACGCAGTGGATTCTGGTGTGTCACGGCCTCATCACCCTGCTTGTTGTGATCTCTTTCCTCTGCGGTCAATGGCCAATCTTTCAGGGAACTTTCA TCCAGCGCATCCATCACTTCCTCACTTTCGGTGCCTACGATTACTTCCAGAGGTTCATTGCGGCTGTGTTCGGGAGCAAAGGAACCGACTTTCTTCTCTC TCTCGAGTATTTCTGTTGCGATCGTCCAAACCCCATACTTCAGATTCTGTATGTGGCAATTATTGGAGGAATTTATTACTTGATTGCAAGTTCTTGTTTT GTCTACATTCCTGGATACTACCTGGGTGGAGTTCACAGACCTGCTAGATCAAAGCACTGCAGTATATGTAACCGATGTGTTGCCCGGTTTGATCATCATT GTGGCTGGATGTGGCTGTTGAGCTCATACAACACTCAAATACTTCTCATGGTATTTCTTGCCGTAGTTTCTCTCTTATTAGCTGGTTTCTTTGGTTACCA TGTCAACCTTTGTGTCACCAACACCACGACAAATGAGACTTTCAAGTGGCAAGAGCACTTAAGCTGGCGAAAGAAACTAAACGAAGCTCGAGCAAGTGCT GCAGCACTGAAAGCAAGCATCAGGGACTTGGGGAGGGAAGCAAAACCCCCAAAAAGCAAATGCAAATCCTTTTTCAGGAGATCTCCACTTGAAGATGCCC AGGTTATTGTTACCAAGCAGAACATGTACGACAAGGGTTTCTTCCGCAACCTAGGTGAGGTCATATTTCCATTCTCATCGAGATCGTCATTTGCTCAAAC GAAATCGAAAGATGGCTGA
AA sequence Show only first row Show all	>Lus10033823 pacid=23172802 polypeptide=Lus10033823 locus=Lus10033823.g ID=Lus10033823.BGIv1.0 annot-version=v1.0 MGTQWILVCHGLITLLVVISFLCGQWPIFQGTFIQRIHHFLTFGAYDYFQRFIAAVFGSKGTDFLLSLEYFCCDRPNPILQILYVAIIGGIYYLIASSCF VYIPGYYLGGVHRPARSKHCSICNRCVARFDHHCGWMWLLSSYNTQILLMVFLAVVSLLLAGFFGYHVNLCVTNTTTNETFKWQEHLSWRKKLNEARASA AALKASIRDLGREAKPPKSKCKSFFRRSPLEDAQVIVTKQNMYDKGFFRNLGEVIFPFSSRSSFAQTKSKDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	0	1
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	1.0	0.9806
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	2.0	0.9645
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10043220 [exp]	4.5	0.9490
AT1G24880		AtLpxC2	lipid X C2, UDP-3-O-acyl N-ace...		Lus10001592 [exp]	6.2	0.9294
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	6.3	0.9294
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	6.5	0.9471
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	7.1	0.9586
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Lus10035945 [exp]	7.7	0.9387
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10019458 [exp]	8.0	0.9469
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10019791 [exp]	8.4	0.9250

Compare expression of checked genes

Lus10033823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.