Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08860 869 / 0 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61910 728 / 0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT5G61900 726 / 0 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G07300 702 / 0 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G67800 96 / 6e-21 Copine (Calcium-dependent phospholipid-binding protein) family AT3G01650 95 / 2e-20 RGLG1 RING domain ligase1 (.1) AT5G14420 94 / 4e-20 RGLG2 RING domain ligase2 (.1.2.3.4) AT5G63970 89 / 6e-19 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT1G79380 88 / 2e-18 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT1G05500 47 / 3e-05 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043206 [exp] 623 / 0 AT5G61900 684 / 0.0 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) Lus10018973 [exp] 568 / 0 AT1G08860 403 / 4e-137 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Lus10032533 [exp] 367 / 1e-122 AT5G61910 387 / 6e-131 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10014587 [exp] 105 / 3e-24 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 101 / 1e-22 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10022294 [exp] 101 / 1e-22 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 92 / 1e-19 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10006463 [exp] 90 / 5e-19 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10033043 [exp] 89 / 1e-18 AT3G01650 492 / 4e-172 RING domain ligase1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029100 [exp] 912 / 0 AT1G08860 857 / 0.0 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.012G108200 [exp] 721 / 0 AT5G61910 827 / 0.0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.015G106400 [exp] 712 / 0 AT5G61910 796 / 0.0 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.016G003000 [exp] 100 / 9e-23 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.001G342200 [exp] 98 / 1e-21 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 97 / 2e-21 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 95 / 2e-20 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G081300 [exp] 94 / 2e-20 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.003G055501 [exp] 88 / 2e-20 AT5G07300 95 / 3e-23 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) Potri.008G183600 [exp] 94 / 4e-20 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10033826 pacid=23172848 polypeptide=Lus10033826 locus=Lus10033826.g ID=Lus10033826.BGIv1.0 annot-version=v1.0 ATGGGAGGCTGTATGTCCGGTGACGTGAAAGGTGGCAAACAGGCAGTCGGCGGCGGGACCCACTTGGGTCCGCAGCCTCACGACAACAACAATGGCGGCG GCCATAACGACGCCGTAGATTTCTTCTTTAGGTCGCGTGGCCTCCATGCCCTTTTCTCCCAGATCGAGCTATCATTATCAGCTTCAAACTTACTCGATCG TGATGTAACCTCGAAGAGTGATCCCATGGCTGTTTTGTATGCCAAGAAGAATGATGGGAAATTGGAAGAAGTTGGCCGCACTGAAGTTATCTTGAATACC TTAAACCCTTCTTGGATTTCGAAAGTCACAATTTCTTATCAGTTTGAGATATTGCAACCACTAGTCATACATGTATACGATGTGGATACTCGATACCATA ACGTACCGGTGAAGTCGCTGAATCTGAAGGATCAAGACTTTTTAGGAGAAGCCAATTGCATGCTCTCTGAGATTGTGACAAAAAAAAACCGTACATTAAC TCTAAGTCTCCATAACAAAAGTGGACATGGTGTTATCAGAAACTTAGGGACCGTCGGCATTTATGCTGAGGAGACAGTGGCCTCAAAAACTGCCGTAGAT ATTGCATTCCGTTGCTCGCACTTGGACAACAAAGACATGTTTTCTCTAAGCGATCCCTTCTTAAGAATATCCAGAATAGTGGAGAGTGGAGGTTCCTTAC CAATATGCAAGACAGACGTGGTACACAACAATCTAAATCCTACCTGGAAACCCCTGTGTCTAACAATGCAGCACTTTGCAAGCAAGGAAAATCCGTTAGT TATTGAATGTCTTGATTTCAACAGCAGTGGCAATCATACACTCATTGGTAAGATCCAGAAATCTATCTCAGACCTGGAAATTCTTCACAGAGAGAAAGCC AGTGTGAATTTAACCTTGCCAGCTCATCATGGCCGTGAAAAGGTTTTGAAGGGACAGCTATTTGTGGATCATTTTGTGGAGAAAGAACAGTTCAGTTTTC TAGATTACATGTCAAGTGGATACGAGCTTAATTTCATGGTTGCAGTTGATTTTACGGCTTCAAATGGAAATCCACGGTTACCAGATTCCTTGCACTACAT TGACCCATCTGGACGCTTGAATTCTTACCAGAAGGCCATAATGGAAGTAGGAGAGGTAATACAGTTCTATGATTCTGATAAGCGTTTCCCAGCTTGGGGT TTCGGAGGGAGAACACCCGATGGTGGAGTATCTCATTGTTTCAACTTGAATGGAACTCCAATTGGCTTGGAGGTTGATGGCGTTGAAGGAATCATGTCTG CATATGCAACTGCTCTACATAATGTTTCTCTGGCTGGACCAACCTTGTTTGGCCGTGTGATTACCAATGCTGCACAAATTGCTGGGCAATCAATTTCCCA GGACCATCGAAAGTACCATGTGTTGCTTATTATAACTGATGGTGTGCTGACTGATTTTCAAGAAACCAAGGATGCTATAGTGTTGGCATCTGATCTTCCA TTGTCAATCCTTATAGTCGGAGTAGGAAATGCAGATTTTAAGCAGATGGAGATCCTAGATGCTGATAATGGTCGTCGACTAGAGAGTTCAACGGGAAGAG TGGCTACTAGAGATATTGTACAATTTGTTCCAATGCGGGAAGTTCACAGTGGACAGATTTCTGCTGTTCAGGCTCTTCTGGAAGAACTACCAACCCAGTT CCTTAGTTATGCGCGGGCTAGAGATCTCAAACCAATTCCTCGGCAACAGCTTGTTTGA
AA sequence Show only first row Show all	>Lus10033826 pacid=23172848 polypeptide=Lus10033826 locus=Lus10033826.g ID=Lus10033826.BGIv1.0 annot-version=v1.0 MGGCMSGDVKGGKQAVGGGTHLGPQPHDNNNGGGHNDAVDFFFRSRGLHALFSQIELSLSASNLLDRDVTSKSDPMAVLYAKKNDGKLEEVGRTEVILNT LNPSWISKVTISYQFEILQPLVIHVYDVDTRYHNVPVKSLNLKDQDFLGEANCMLSEIVTKKNRTLTLSLHNKSGHGVIRNLGTVGIYAEETVASKTAVD IAFRCSHLDNKDMFSLSDPFLRISRIVESGGSLPICKTDVVHNNLNPTWKPLCLTMQHFASKENPLVIECLDFNSSGNHTLIGKIQKSISDLEILHREKA SVNLTLPAHHGREKVLKGQLFVDHFVEKEQFSFLDYMSSGYELNFMVAVDFTASNGNPRLPDSLHYIDPSGRLNSYQKAIMEVGEVIQFYDSDKRFPAWG FGGRTPDGGVSHCFNLNGTPIGLEVDGVEGIMSAYATALHNVSLAGPTLFGRVITNAAQIAGQSISQDHRKYHVLLIITDGVLTDFQETKDAIVLASDLP LSILIVGVGNADFKQMEILDADNGRRLESSTGRVATRDIVQFVPMREVHSGQISAVQALLEELPTQFLSYARARDLKPIPRQQLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10033826 [exp]	0	1
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10003261 [exp]	5.2	0.7865
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	5.2	0.8087
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	6.6	0.8041
					Lus10003592 [exp]	7.0	0.7877
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	7.1	0.7783
AT4G01400			unknown protein		Lus10012607 [exp]	7.4	0.7929
AT5G02170			Transmembrane amino acid trans...		Lus10010855 [exp]	7.9	0.8010
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	8.5	0.8001
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	12.5	0.7752
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Lus10028376 [exp]	15.6	0.7627

Compare expression of checked genes

Lus10033826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.