Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27230 147 / 2e-35 Frigida-like protein (.1) AT5G48385 97 / 3e-20 FRIGIDA-like protein (.1) AT1G31814 86 / 6e-17 FRL2 FRIGIDA like 2 (.1) AT5G27220 82 / 3e-15 Frigida-like protein (.1) AT4G00650 48 / 2e-05 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004132 [exp] 374 / 6e-115 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1) Lus10004131 [exp] 331 / 8e-96 AT5G48385 72 / 8e-13 FRIGIDA-like protein (.1) Lus10038038 [exp] 323 / 9e-93 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10009979 [exp] 322 / 3e-92 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10001723 [exp] 264 / 4e-73 AT5G48385 / FRIGIDA-like protein (.1) Lus10042965 [exp] 127 / 6e-30 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 123 / 1e-28 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10033831 [exp] 113 / 5e-25 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10018975 [exp] 92 / 3e-18 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043900 [exp] 256 / 8e-70 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044000 [exp] 248 / 8e-69 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G044100 [exp] 231 / 2e-63 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G044200 [exp] 135 / 1e-31 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.007G050800 [exp] 115 / 4e-26 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 112 / 3e-25 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.014G175200 [exp] 103 / 3e-22 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 94 / 2e-19 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 66 / 2e-10 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.018G078701 [exp] 51 / 6e-06 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10033828 pacid=23172851 polypeptide=Lus10033828 locus=Lus10033828.g ID=Lus10033828.BGIv1.0 annot-version=v1.0 ATGGACGAACATGCTGGACCACGACATTCACATAATGTAGGCGCCGACGATACCGGCGGGTCGCCGGGCACCGCCGTTCCTTATCTCCGGGACATGATCG ACCAGCTCCGAGACCGGGCTTCCAAGATTGCTTCTTTCGCCGCGGAGTTCAACTCCATCGCCTCCGCCATCGACGCACGTTCCAAGAAGTTGCTGTCGGC GGAGGAAAAGATCAATGAAGAGAGGAAAGAACTTGCACGGAGGATGGAGGAACTCGACAGGAAGTCGAAAGATGTCGAACAATTGGAGGAGACGATTGAG TCGGAGAAGGCCGCCGTGGAGTCGAAGTTGACTGACCTTGGGGGAAGAGAGGAGCGTTTCGAGAGACTAGCGAATTACATTCAGGTGAGAGTGATTAGAG TGAGGGAGGTTGAAGAAGAGGTGGAGGAGAAGCGGAGGCAAGTAGAAGCCAAAGAGAAGGAGATGAAGGAATGCTTCAATAGTTTCCGGTTGAGGGAGAA AGGATTCGAGGATCAATTGGCCGAGTTCAAGAACAAACAGGCCGAATTCCAGGTACGCTTAACTGAATTAAGTATTAAGGATAGGGAAATTGAGAATAAA GAGAAGGGATTAGCAGAACTTGAATCCAATTTGAGATCCAGGGAGAGGGGATTTGAACAGAGAGTGAATGAAATTAATAAGAAAGAAAGGGATGTAGATG GTAGGGAGAAACACTCCAAAGAAGTTGGAGATAGAGTTGAACAATCCTCTACAGAGCTCCAGTTGCGAGAGAAAGGGTTCCATGATCGATTTTTGGAGTT CATGACGAAGCAGGTGAAGTTTAAAGACAAAGAAAGGGTGACTGAGGAGAAAGAGAGATGTGTTGAGCAAAGACTTAAGGATGTTATACTGAGAGAGGAA GGGTTTCAAAAGAAAGGAGAGGACTTGGAGTTGATGAAGAAGGCAATCGAGGAGAAAGATCGAAAATCTAAGGAGCTTCAACTCCAAGTCCGACAATGTT CAGATGATCTCAAGGCGAAAGAGAAAAGATTCCATATTCAATTGGCAGAGTTCAAAGGGGAAGAAGCACAGTTCAGAACACGTTTGAGTGAATTGAGAGC GAGAGAGAAGGACCTTGCTGGGAAGGATGAGGAATTTCAGAGACGTTATGATGACCTTAAATCAAGAGACAAGTGCCTAGAGCTTAGACTGGAAGACTTC AAGGTCAATGAGGCCAAATTACAAGATGAAATGAGGGTGAAAGAAAGGGAGATTCAGAAGAAAGAGAAGAAGCACCTAGAACTTGAGTTGAAATTTGAGC AACTCTCAAGAGATTTGAGAGTGAAAGAGAAGGATATGGCTGGGACAGAGGAGGAATTTCATAGATGTTATGATGACCTTAAATCACGATACACGAGCCT AGAGCATAGACTGGAAGACTTCAGGGTCAAAGAGGGCAAATTACAAGATGAAATGAGGGTGAAGGAAAGGGAGATTGAGAAGAAAGAGAAGAAGCACAAA GAAATTGAGGTAAAATGTGAGCAACTCTCAAGAGATTTGAGAGCGAAAGAGAGGGAAACTAAAACTAGAGAGAAACAGTTTATACTACTTGAACATGAAG TGGAGGATTGTAAGAAAAGGCTAGCCCAATTTCAAGTGTATGATAGTAGATACAGAAGTGTCAAGTTGAGGGAAAATAAACTTAAAGATGGATTCAAGAT GCTTGACAGGCGGATTAAAGACTTTGAACTTAAGGAGATGCAACTTGAAGCATGGCACAAGGAAGTTGACTCGAAAGCTAAAAGGTTATCAAACCAGATG AAAGAACAAGAGCTTAAAGATAAGAAGCAGGTTGAGAGAATGCGGGGAGAATCTGCCCTGAAAGGTAAGAAGCTCGTAGTGAAGATAGAGCCCACGGATA CTTCTGTGTCTCACAACTCATTGGACCATTCATCTGACGCTGACATTAGGTTTTGTGTGACAATGAATGGAGCAGACTTGCAAATCTTCTTGAATGAACG TTCTGATCATCTTGATTTTATGATAGATGAGATAGAGACTGCTCTCAAACTCTCATCTAACCCTGCAAAGCTTGTCTTGGATGCCATGCAAGGATTTTAC ACACCACATTTGAAAAAGGGGGATGTTGAGTTTGAGGAGGCTGTCATAAGAAAGAGTTGCATAATGTTACTGGAACTGTTGACAAGACTTTCTCCAGAAA TTAAGCCAAATATTAGAAAGGAAGCAATGAAACTAACAGCTGATTGGATGACAAGAATGAGGTCTGACGCCCAGCACTCCATGGAAGTTTTAGCAGTCAT GCAACTTTCGGCTGCATATGGATTGGGGTCTGCGTTTGAAGATGATGACCTTGTTAGTCACTTGGGAGTAATTGCTCACTACGATCAGGCTCCTAAGCTA TTACAAGATCTTGGTTTAGCTGACAAGGTCTCAAGTGTTATCCAAAAACTTCTTGAAAAGAAGCTCCAGGTCGAAGCTGCTAGATTTATCTCTGCATTTG GGTTGCATGCTGAATTTCCAAGTGTGACTTTGCCAAAAGATAATGAGGAATCAAGCTTTGCTCCTTTGTTTGGGAACAAGTCTGTTGCTGCATCTACAAC CCCTGTCCTTTTGCCCTCATCTGAGACTGGAACTAAACGTCCACGACCAGATTCTGCTCCTGTAAACTTGCCAGCACAGCAACTCAAAAGGTTAAAGTTA CCTGCTCAACAGCCAGATAGGTCAAGTTTAACTGGTCAGCCGCCGGAAACGTCTTTACGTGCTCATCAACCAAACTCTCATGAACCTGCTCATGTGACCT ATGTGGAAGTAACTGCACATCATAGGTTAAATTTAACCAATTCACTTTCTCAGCAGCCAGAGGGGATAAAGTCGCCTGCTCAGCAGCCAGAGGGGTTTGG TTCACATGCCCAGCAGCCAGAGGGGTTAAAGTCACATGCCCAGCAGCCAGAGTGGTTAAAGTCGCCTGCTCAGCAGCCAGAGAGGTTAAAGTCACCTGCT CAGCAGCCAGAGAGGTTAAAGTCGCCTGCTCAGCAGCCAGAAGTATTGTTACCTAGTGATCAAGGTTGTTGCAATCCTTCTCCCATGAATGCCGTGCACT CTGGGGCTAGAAACAGATTGGCTTCTTCACCCTCGAAATCAACATCTCAGCTCTCAAAATCAGCAAACACAATGGTTCCTTTGCCCCCAAAATCATCGTT TGTGCCCAAGTGTCTCGAAAATGGGGGCGTGCGTCTTAGAGCATTATGCAGGAAAATTGAGAGCAACAAGTTGTTTTGCCCCGAAATTACTGACGCACTT GGACTTGCATCTGATCCAGCAGAGTTTGTTTTAGGTGTGGTAAAGAACCCCTCCACTCTAAACCTGAGCAGGGGAACTGAAGCAGTAAGCTTAAGCAATC CTCAACATGGTTCGCTGTTATTGTTGAACTGTATGTGGCGGAAGTCACCTCATTTGAAGCCAGATGTCAAGAAAGAGGCCTTGAGCTTTGCAAAGGACTG GAATTCAAAACTTGTGAATCAGAGGGGCGTCAAGGATAACTTGGAAGTCGTTTGTTTCCTGCTATTTTTAGCTGCCTACAAATTGGTATCCTATTTAGAT CAGGATGAGTTTTTCGGCGTGTTTGATAAAGGATATTGGCGTGAATACGCCATTAAACTGTTTGGGTTTCTTGGCTTCAAAGATTTTATCCCAAAGTTCC TCGAATACCTTATGAGAACAAACCAACATCTGGAGGCTCTTCAATGCATCAACGTATCGAATATGCTCGACAACTCACCTTCTGCACGGGCTCTCCTAAG TGATTATTTGCTTAAATGCAGTAAGAAATTTCATAGCACCGGAAGCAACTTTTTTCAACGTATTAATCAAGAGCTCAGGGTCTGGAAAGCTGTAGCCCAA TGCATTGAAGATCAAGATGTGGTTAAGCAATTCCAAGCCCGTATTTTGGCCCTGCATGAGCAGAAACAGAAACACCAGCAGCAACATAATGCTGATGCTG CTTCTTTATCTGCGTCTGTAGCAGCTATAGCAGCCACCACGTACACTCCTGCCGAAACCAGCATCCCTCAACCTCAGGACGAGAGTCGTCAAAACTTTCC TATTGAACCTAAAAGAACGCGGTGGTCTAATGCAAACATCCAGCCTCCACGAAACCCTTTGCAGGGTTCAGCTGGACCTAGTGCTATACATTACCCGAAT CCAGCTTATGGATACCCAGGGTACCCTCATCCTGTCATTCCCAGCTTTCAGAGCAGGTCGTACGACTATCCTGGACTCGGAAGGTCAGTCCCCTATTAA
AA sequence Show only first row Show all	>Lus10033828 pacid=23172851 polypeptide=Lus10033828 locus=Lus10033828.g ID=Lus10033828.BGIv1.0 annot-version=v1.0 MDEHAGPRHSHNVGADDTGGSPGTAVPYLRDMIDQLRDRASKIASFAAEFNSIASAIDARSKKLLSAEEKINEERKELARRMEELDRKSKDVEQLEETIE SEKAAVESKLTDLGGREERFERLANYIQVRVIRVREVEEEVEEKRRQVEAKEKEMKECFNSFRLREKGFEDQLAEFKNKQAEFQVRLTELSIKDREIENK EKGLAELESNLRSRERGFEQRVNEINKKERDVDGREKHSKEVGDRVEQSSTELQLREKGFHDRFLEFMTKQVKFKDKERVTEEKERCVEQRLKDVILREE GFQKKGEDLELMKKAIEEKDRKSKELQLQVRQCSDDLKAKEKRFHIQLAEFKGEEAQFRTRLSELRAREKDLAGKDEEFQRRYDDLKSRDKCLELRLEDF KVNEAKLQDEMRVKEREIQKKEKKHLELELKFEQLSRDLRVKEKDMAGTEEEFHRCYDDLKSRYTSLEHRLEDFRVKEGKLQDEMRVKEREIEKKEKKHK EIEVKCEQLSRDLRAKERETKTREKQFILLEHEVEDCKKRLAQFQVYDSRYRSVKLRENKLKDGFKMLDRRIKDFELKEMQLEAWHKEVDSKAKRLSNQM KEQELKDKKQVERMRGESALKGKKLVVKIEPTDTSVSHNSLDHSSDADIRFCVTMNGADLQIFLNERSDHLDFMIDEIETALKLSSNPAKLVLDAMQGFY TPHLKKGDVEFEEAVIRKSCIMLLELLTRLSPEIKPNIRKEAMKLTADWMTRMRSDAQHSMEVLAVMQLSAAYGLGSAFEDDDLVSHLGVIAHYDQAPKL LQDLGLADKVSSVIQKLLEKKLQVEAARFISAFGLHAEFPSVTLPKDNEESSFAPLFGNKSVAASTTPVLLPSSETGTKRPRPDSAPVNLPAQQLKRLKL PAQQPDRSSLTGQPPETSLRAHQPNSHEPAHVTYVEVTAHHRLNLTNSLSQQPEGIKSPAQQPEGFGSHAQQPEGLKSHAQQPEWLKSPAQQPERLKSPA QQPERLKSPAQQPEVLLPSDQGCCNPSPMNAVHSGARNRLASSPSKSTSQLSKSANTMVPLPPKSSFVPKCLENGGVRLRALCRKIESNKLFCPEITDAL GLASDPAEFVLGVVKNPSTLNLSRGTEAVSLSNPQHGSLLLLNCMWRKSPHLKPDVKKEALSFAKDWNSKLVNQRGVKDNLEVVCFLLFLAAYKLVSYLD QDEFFGVFDKGYWREYAIKLFGFLGFKDFIPKFLEYLMRTNQHLEALQCINVSNMLDNSPSARALLSDYLLKCSKKFHSTGSNFFQRINQELRVWKAVAQ CIEDQDVVKQFQARILALHEQKQKHQQQHNADAASLSASVAAIAATTYTPAETSIPQPQDESRQNFPIEPKRTRWSNANIQPPRNPLQGSAGPSAIHYPN PAYGYPGYPHPVIPSFQSRSYDYPGLGRSVPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	0	1
AT4G28100			unknown protein		Lus10018524 [exp]	3.5	0.8544
AT3G10430			F-box and associated interacti...		Lus10007847 [exp]	7.5	0.8009
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10019214 [exp]	9.5	0.8441
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	9.6	0.8347
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10035050 [exp]	11.7	0.8042
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	12.0	0.8044
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	13.0	0.8049
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	14.5	0.8047
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10015319 [exp]	15.3	0.7913
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	16.9	0.8467

Compare expression of checked genes

Lus10033828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.