Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027765 [exp] 116 / 3e-30 AT5G48385 79 / 6e-15 FRIGIDA-like protein (.1) Lus10035529 [exp] 96 / 1e-24 ND 39 / 0.001 Lus10006522 [exp] 79 / 3e-18 AT5G27230 59 / 4e-10 Frigida-like protein (.1) Lus10018978 [exp] 65 / 3e-12 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027766 [exp] 42 / 0.0001 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033829 pacid=23172729 polypeptide=Lus10033829 locus=Lus10033829.g ID=Lus10033829.BGIv1.0 annot-version=v1.0 ATGAAATGGCCGCCAAGTTACAAAGCCATCCAATGGCCATTTGGTTCTGGTGTTGAGTTTCTTCTCTCGAATCCAAAAACCCATGATTCGAGGGTCATTC TCAAATCTCTATCTTCTTCGTTTTCCTACCAATTTCAAGCAGCAAAGGTCGCTCATTTTCAATCCAGTTTCCTCTACCATCAATCACCACAAGGTGTGGC TCTGAATGGTCGGCAAGAGCTTACAGAGATGCGAAACACCAGGTACCAGGCCTTGAACATCCATCTTGATTCTCTGAAAGCTTTAGCAAAAGGAGTGGCC AGACTTGGGCATGATCCAAGCTTTGTCATCAGGAAGATCAGCCAGCATCTCGAGATCCTTGAAAGTCTATGGGGAAAGAAAAGAAGGTGCTTGCTAGCAG CTGGTATTTTTATAAGGGATAGCCAAAGTCCTGGTGTCGGACCGAATCAGTTTAGTGGTGCAACAGCTTCTGGACACAACTGGCCATGGCAGGCAGTGAA TTTGGGTGGAGGAGAGCAGAGGAGCAAGAGGCAGAAGCAGTAA
AA sequence Show only first row Show all	>Lus10033829 pacid=23172729 polypeptide=Lus10033829 locus=Lus10033829.g ID=Lus10033829.BGIv1.0 annot-version=v1.0 MKWPPSYKAIQWPFGSGVEFLLSNPKTHDSRVILKSLSSSFSYQFQAAKVAHFQSSFLYHQSPQGVALNGRQELTEMRNTRYQALNIHLDSLKALAKGVA RLGHDPSFVIRKISQHLEILESLWGKKRRCLLAAGIFIRDSQSPGVGPNQFSGATASGHNWPWQAVNLGGGEQRSKRQKQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033829 [exp]	0	1
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	33.4	0.7601
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10020683 [exp]	48.1	0.7290

Compare expression of checked genes

Lus10033829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.