Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54390 340 / 1e-118 ING2 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) AT3G24010 105 / 5e-27 ATING1 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018974 [exp] 320 / 3e-110 AT1G54390 328 / 2e-112 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Lus10043140 [exp] 102 / 5e-26 AT3G24010 273 / 5e-93 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10032609 [exp] 61 / 2e-10 AT1G04610 248 / 7e-75 YUCCA 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G033800 [exp] 355 / 8e-124 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Potri.013G058800 [exp] 351 / 1e-122 AT1G54390 372 / 4e-131 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Potri.003G174000 [exp] 92 / 9e-22 AT3G24010 281 / 5e-96 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10033830 pacid=23172834 polypeptide=Lus10033830 locus=Lus10033830.g ID=Lus10033830.BGIv1.0 annot-version=v1.0 ATGGCAATCGCGCGAACAGGCGTCTATGTTGACGATTGCTTAGAGTACGCGAGCACGTTGCCTGCTGAGCTTAAAAGGCTTCTTAAGACCATCAAGGAAC TCGACAACCGATCTCAGTGTAAGATCACTCGAAGCTCTGGGATATCTTTTGCCTCGATGATAAATCAAACAAGGGAAGATACAAAGGATTTCCTGGGGTT AGCTTCGCAGAGCTCAAGGAAAGGAAATGGTAACAGTTACAATAACAAGAACAATTTTGACGAGGATGATACAACTGAAACATTGGGAAAGGAAATTGAG GAGAATCAAGACAACGCGTTAAGTTTGTGCACAGAGAAGGTTTTATTGGCACGGCAGGCTCATGATCTTATAGACAGCCATATAAAACGTCTTGATGAGG ATTTGAACAATTTTGCAGAAGATTTGAAGCTAGAGGGAAAGATAGCACAAGATGAACTAGCTATACTCCCGCCACTTCCAATAATGATTCCAAAACCTGA AAAGCGCAAGCAGTTCTATGGAACACCTCAGTCAAGGAGGACGGATTTCAGGGACAGAGATTGGGATCGAGATCGTGATAGGGATTTTGAGCTCATGCCC CCACCTGGAAGCAATAGAAAGGACTTTGCAGTGCCTGTTGATATGGATCAACCCATTGACCCCAACGAGCCAACCTATTGTGTGTGCCATCAGGTATCAT TTGGGGATATGATTGCATGCGACAACGAAAGTTGCCAAGGAGGAGAATGGTTCCATTATGCCTGTGTTGGGCTGACACCAGAGACTCGATTCAGGGGAAA ATGGTACTGTCCGACCTGTAGGATGCTGCCTCACTGTCAATGA
AA sequence Show only first row Show all	>Lus10033830 pacid=23172834 polypeptide=Lus10033830 locus=Lus10033830.g ID=Lus10033830.BGIv1.0 annot-version=v1.0 MAIARTGVYVDDCLEYASTLPAELKRLLKTIKELDNRSQCKITRSSGISFASMINQTREDTKDFLGLASQSSRKGNGNSYNNKNNFDEDDTTETLGKEIE ENQDNALSLCTEKVLLARQAHDLIDSHIKRLDEDLNNFAEDLKLEGKIAQDELAILPPLPIMIPKPEKRKQFYGTPQSRRTDFRDRDWDRDRDRDFELMP PPGSNRKDFAVPVDMDQPIDPNEPTYCVCHQVSFGDMIACDNESCQGGEWFHYACVGLTPETRFRGKWYCPTCRMLPHCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Lus10033830 [exp]	0	1
AT1G59520		CW7	CW7 (.1.2.3)		Lus10003786 [exp]	4.5	0.8609
AT1G09040			unknown protein		Lus10006519 [exp]	6.3	0.8675
AT1G20670			DNA-binding bromodomain-contai...		Lus10022999 [exp]	6.6	0.8765
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	12.5	0.8556
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	13.8	0.8568
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	24.2	0.8435
AT5G18420			unknown protein		Lus10008554 [exp]	25.9	0.8671
					Lus10026715 [exp]	33.1	0.8525
AT5G07960			unknown protein		Lus10021623 [exp]	34.7	0.8212
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	35.8	0.8531

Compare expression of checked genes

Lus10033830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.