Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27220 96 / 8e-20 Frigida-like protein (.1) AT5G27230 54 / 6e-07 Frigida-like protein (.1) AT5G16320 49 / 1e-05 FRL1 FRIGIDA like 1 (.1) AT5G48385 48 / 4e-05 FRIGIDA-like protein (.1) AT3G12190 46 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003566 [exp] 184 / 2e-49 ND / Lus10018975 [exp] 117 / 1e-26 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027765 [exp] 110 / 3e-24 AT5G48385 79 / 6e-15 FRIGIDA-like protein (.1) Lus10033828 [exp] 107 / 4e-23 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10018980 [exp] 100 / 4e-23 AT5G27230 55 / 3e-08 Frigida-like protein (.1) Lus10042540 [exp] 100 / 2e-21 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10009979 [exp] 96 / 8e-20 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10038038 [exp] 93 / 8e-19 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10004132 [exp] 91 / 1e-18 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044200 [exp] 152 / 2e-37 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.005G043900 [exp] 82 / 2e-15 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044000 [exp] 81 / 2e-15 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G044100 [exp] 77 / 3e-14 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.007G050800 [exp] 58 / 2e-08 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 55 / 3e-07 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.002G239900 [exp] 54 / 7e-07 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.015G110066 [exp] 44 / 0.0004 AT4G00650 140 / 5e-39 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10033831 pacid=23172735 polypeptide=Lus10033831 locus=Lus10033831.g ID=Lus10033831.BGIv1.0 annot-version=v1.0 ATGAAGAGGCTGAGTGAGCAACTGAAGGTTGTTGATGTGAAGCAAGCGAGTCTGCGGAAGTTGTCCGACGAACTTCATGCTCAGAGTAACACCATTCTGC TTTTCACCCTCGAATGGAAGGATTTGGAGCTGCACTTTGAATCAATGAGAAACGAGTTGCTGGAACAGGCCAAAGACATTTCCTTTCAAGAAAAGAAAGT GGTGGAAGCTACAGAGAAACTTAGGGCAAAGGAGATTGACGTGGAGAACGGTATGAAAGAGGTTCAATGGTTTTTCGAAGAAATGAGGGAGAAGGAAGAA GAGCTGGGTTTGCTTCAAGGTAAAGTCTTGGATTGTCGATCCGAGCTTGAAGGTAAAGAGAAGGAACTACATTGTGTCCAAAACAAGGTTAAAATTTGTA CAGAGGATCTTCAGGGGAAAGAGAAGGAATTAGTTGTTTTAGAAAGGAGATTGAATGAGATGCGTGAGGAGATTGCTGTGAAAGAGGTTGAATTAGATTT AGTAAATAAGTCTGTTGATGAAAGTTGCACGAAGCTTAAATGGAGGCAGAAGGAAGTGGAGGAAATTGTTAAGATGTTTTCAGATTGTAACCGTCAGCTG AAGTTGAAAGATAAGGAGCTGAATGAGGTTAAGGAGTTGATTCGAGAGTGCAATGCTGTACGAAAGTCCGAGGAACGAAGGCTGGCTGCGATGGAGAACA GGACTAGGCATTGCTGTGAAGAGCTTGGTTTGAAAGAGAAGGAGCTAGCAAGTGTCAGAACTTCGATTAAAGAATGCGTCAAGGAGTTGAGTTGGAGGAA GGAGGAACTCCATAAGGACAGGAGTCAGGTTGATTCGATTAAACTAATGATCGAGGAATTCAGTGAAGAACTCGAGATAAAGGAGGCGAAGTTCAATGAG GTGATCAAGTCTGTCAAGAAGAAACAGAAACAATTAGAGTCAATTAGTGACGAACTTGAATCAAAGACAAAGAAGCTGGATCGTGTGAAGGAAGAAATAG AAACATCTGTGAAGAATCTCGAACTTAAAAAGGCCGAGTTGAGCGAGATTCAATCTTCCATTGTAAAGCTTGAAGAAGTGAGAGAGCAGAAACAAGTGTC GATTCAGGCATTGGTTGAGGAACATCTAAGCAAATGCGCCATGAAGCTCGAACCGAAAATGGCACAACTGAACTCGATCCGGAAAAAGTTGCTAGACTGC AACCAAAGACTCACAGCCAAGAAACAAGATGTTGATTCCATGAAGCGAAGACTAGAGAAGCATGTTGAGAACATTAAGTTGAAGGAAGAAGAACTGGACT CGAGACAAAAACTACTCGAAGAACGTAATGCTGCAGTTGAAGAGAAAGAGAAGGAGGTAAATAATAACCTTGCTGAAGCTGCTTTGCAGCAGCGAAGTTC TGCTGAAAAAAGTGTAGAAAGGTCTATCCAAGGGGGAAATGGTAGGAACTTACAGACTCTATTGAACCAGCATTTCCAAAGCCATGATTTACTTCTGAGT GAAGTTTGGAGTGCCCTGCTGAAGTCACCTGATCCAGCAAGGTTGGTGCTGGATGGCATGTTTGGATTTTATCCACAGGAAAGCGGGAGCATTGAAGAGT ACGAATTGAGCGTTGTTAGGAAGAGTTGCATAGCTTTGCTAGAGCTCTTATCGAGAATGATCTCGGCACAGATGAAGCCTCAAGTGTGTGAAGAATCAAT GGAACTTGCTAGAGATTGGAAGTCAAGACTGGGGACAGCACCTGCTAACTCTTTGGAGGTGTTAGCTTTGGTGAAACTTGTATCTGCATTCAGATTACCT CTTGCTTTCAAACCTAGTCTTGTTAAAGAAGAATGGGGAGCACTTGCCTTTGCTCATAACTTAATTGGTTCCTTTATCCTTTCTTCGACTCGAGCTGCTG GTCAGTTTGGCAACCCAATTCATCCTTCATCCGAAGAAGGAAGCTACGAACAGCTTCTGCAAGATGGGCCATTACCATCTGAATTATCGCAAACTGAAAT TACTAATTGTCTTGAGAACTCACCAGATCCTGCAAAGATGGTCTTTGGTCTGATACGAGATTCGCTTGGGCAGCACGAAAGTGGCAGCGTCAAACCATGT GATGAAAGTGTCCTGAAGTTTCTGGCTCTTCTGCTGCAACAACTGATGAGTATGCGGCCGTTCGTACTTCCTTGTGTGAGAGAAGAAGTAACTAAGTTTG CAGTTACTTGGAAAGGAAGTTTGCGAATGGTGGCATTAGACATACTAGTGTTCCTTTTGTTGCTTGCAGCATACGGGGTTGCTACTCATTTTGAACAACA AGAAGTTGTAAATCTTGCTGGAATGATTGCTCACTACAAAAGGGCTCCTGAGTTATGGCTCGCTCTTGGCCTTCAAGGGAAGGTATCTGGTCTGATTGAA AGTCTGATGAAGAAAGATATGGACATCGAGGCGGCTAGATTCAGTTGCGCATTTCGGCTAGTTAATGAGTACCCTCCACATCTAATCTTGCTGAAGTTTT TGGAGAAAAGGAGGACCTTTGAGAGTGGGAAGCACTTACTTGAGTTGCAGTTTGAACCATGGCTGGCACCTGGTGAATTACAGTGTGAAGCCTTCAACAA GCACATCAACTTTCTGAAACGACTGATCAAGCGCGTGAAAGAGTTCAACTTTGACCTAAGTCCCTTAAACTTGAAACTAGTCCAGCATTGCCATGAATTG GCAAGGCTGTTGGAACTGAAGACAAGTTGTTTACTAGGTGTTGCTGCAAGTATTGACCAGCTACCCCTAAGCCAAAGTGGACTCGACCATAATCGTCCTC ATGGAGCAAGCAACGTTGTTCTTCTTCCTGGTTATCCAACTAGGCAATATTCGGCGCCAGCTCAGCATTCTATCTCATTTACTCAGCAACAACAACCTAA CCGGACTTGGCAGGCTGGAGACTTGACTTGTCATGCACAGAGAAACAAGCGAACAAGGACTGATCATATGCAGTAA
AA sequence Show only first row Show all	>Lus10033831 pacid=23172735 polypeptide=Lus10033831 locus=Lus10033831.g ID=Lus10033831.BGIv1.0 annot-version=v1.0 MKRLSEQLKVVDVKQASLRKLSDELHAQSNTILLFTLEWKDLELHFESMRNELLEQAKDISFQEKKVVEATEKLRAKEIDVENGMKEVQWFFEEMREKEE ELGLLQGKVLDCRSELEGKEKELHCVQNKVKICTEDLQGKEKELVVLERRLNEMREEIAVKEVELDLVNKSVDESCTKLKWRQKEVEEIVKMFSDCNRQL KLKDKELNEVKELIRECNAVRKSEERRLAAMENRTRHCCEELGLKEKELASVRTSIKECVKELSWRKEELHKDRSQVDSIKLMIEEFSEELEIKEAKFNE VIKSVKKKQKQLESISDELESKTKKLDRVKEEIETSVKNLELKKAELSEIQSSIVKLEEVREQKQVSIQALVEEHLSKCAMKLEPKMAQLNSIRKKLLDC NQRLTAKKQDVDSMKRRLEKHVENIKLKEEELDSRQKLLEERNAAVEEKEKEVNNNLAEAALQQRSSAEKSVERSIQGGNGRNLQTLLNQHFQSHDLLLS EVWSALLKSPDPARLVLDGMFGFYPQESGSIEEYELSVVRKSCIALLELLSRMISAQMKPQVCEESMELARDWKSRLGTAPANSLEVLALVKLVSAFRLP LAFKPSLVKEEWGALAFAHNLIGSFILSSTRAAGQFGNPIHPSSEEGSYEQLLQDGPLPSELSQTEITNCLENSPDPAKMVFGLIRDSLGQHESGSVKPC DESVLKFLALLLQQLMSMRPFVLPCVREEVTKFAVTWKGSLRMVALDILVFLLLLAAYGVATHFEQQEVVNLAGMIAHYKRAPELWLALGLQGKVSGLIE SLMKKDMDIEAARFSCAFRLVNEYPPHLILLKFLEKRRTFESGKHLLELQFEPWLAPGELQCEAFNKHINFLKRLIKRVKEFNFDLSPLNLKLVQHCHEL ARLLELKTSCLLGVAASIDQLPLSQSGLDHNRPHGASNVVLLPGYPTRQYSAPAQHSISFTQQQQPNRTWQAGDLTCHAQRNKRTRTDHMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27220			Frigida-like protein (.1)		Lus10033831 [exp]	0	1
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10016929 [exp]	1.0	0.8792
AT5G66800			unknown protein		Lus10009349 [exp]	5.7	0.8283
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	7.6	0.8674
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	15.9	0.8233
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012685 [exp]	17.1	0.8454
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10005313 [exp]	18.5	0.8167
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017468 [exp]	21.4	0.8121
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10024796 [exp]	22.1	0.8249
					Lus10013458 [exp]	23.6	0.7325
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	24.5	0.8015

Compare expression of checked genes

Lus10033831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.