Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05000 285 / 8e-100 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018981 [exp] 359 / 4e-129 AT3G05000 285 / 5e-100 Transport protein particle (TRAPP) component (.1) Lus10004135 [exp] 299 / 4e-105 AT3G05000 292 / 1e-102 Transport protein particle (TRAPP) component (.1) Lus10001721 [exp] 248 / 8e-84 AT3G05000 241 / 1e-80 Transport protein particle (TRAPP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031000 [exp] 298 / 4e-105 AT3G05000 312 / 1e-110 Transport protein particle (TRAPP) component (.1) Potri.005G044300 [exp] 272 / 9e-95 AT3G05000 286 / 3e-100 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10033832 pacid=23172824 polypeptide=Lus10033832 locus=Lus10033832.g ID=Lus10033832.BGIv1.0 annot-version=v1.0 ATGGGAAGAGAAGTGTCGGAGAGCTGCATCGACAGCTTACTCACCGAGATGGTTTCTTCCTACTGCAATCGTTTCTACGCCAATAATTCTGACCTCGCCG CCCGCCGGATCGAGGCCATCGGATATCAAGTCGGCTACCAGCTCTCCGAGCGGTATACGATGGAGAGACCTCGGTTCGGTGATCATCTAGAGGCAATAAA GTTCATCTGCAAGGACTTCTGGTCTGAGCTTTTCAAGAAGCAGATAGATAACTTGAAGACAAACCATAAAGGAACCTTTGTGTTGCAAGACAATCGATTT GGTTGGCTTGCACGGGTGTCATTGGATCCAGCGGTGGAGAAGAGTCTTCCCCGAGATCCTGAAGAACTGGCTGAAAGTAAGACGGGTCAAGCAATGGGGA TGTATCTCTATTTCCCATGCGGGATCATTAGAGGAGCTCTTTCAAACCTGGGGATCACTTGTACAGTTTCAGCTGATATCTCTAAACGTCCAGCTTGTTC GTTTGTGGTTCGGATAAAGGCTTGA
AA sequence Show only first row Show all	>Lus10033832 pacid=23172824 polypeptide=Lus10033832 locus=Lus10033832.g ID=Lus10033832.BGIv1.0 annot-version=v1.0 MGREVSESCIDSLLTEMVSSYCNRFYANNSDLAARRIEAIGYQVGYQLSERYTMERPRFGDHLEAIKFICKDFWSELFKKQIDNLKTNHKGTFVLQDNRF GWLARVSLDPAVEKSLPRDPEELAESKTGQAMGMYLYFPCGIIRGALSNLGITCTVSADISKRPACSFVVRIKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05000			Transport protein particle (TR...		Lus10033832 [exp]	0	1
AT5G12240			unknown protein		Lus10026824 [exp]	1.0	0.9107
AT3G05000			Transport protein particle (TR...		Lus10018981 [exp]	1.4	0.8742
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	3.0	0.8715
AT1G55535			unknown protein		Lus10010333 [exp]	4.5	0.8446
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	5.9	0.8362
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	6.0	0.8664
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10032606 [exp]	8.7	0.8174
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	8.9	0.8289
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10024876 [exp]	8.9	0.8258
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	17.0	0.8222

Compare expression of checked genes

Lus10033832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.