Plant FIBer expression Database

Lus10033833 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05780 146 / 5e-47 Vacuolar ATPase assembly integral membrane protein VMA21-like domain (.1)
AT2G31710 132 / 1e-41 Vacuolar ATPase assembly integral membrane protein VMA21-like domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018982
[exp]
184 / 2e-61 AT1G05780 129 / 2e-39 Vacuolar ATPase assembly integral membrane protein VMA21-like domain (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G160500
[exp]
163 / 7e-54 AT1G05780 138 / 6e-44 Vacuolar ATPase assembly integral membrane protein VMA21-like domain (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09446 VMA21 VMA21-like domain
Representative CDS sequence
>Lus10033833 pacid=23172801 polypeptide=Lus10033833 locus=Lus10033833.g ID=Lus10033833.BGIv1.0 annot-version=v1.0
ATGTCAGGAGTGGTGCAGAAGTTCTTCATCACTTCAATGCTCATGTGGATGGCTCCAATTGCGATCCTGTATGCATTCAACCACAACTTGCTTCCCGGTA
TAACTAAAATGTCCCCGCATTCTCTGACGTTGGTGAGTGGATTTGTTGCTGTTATATCGGTGAACATCATGATTGCGTTCTACATATGTATGGCAATGAA
GGAACCCGTGGATAAACATGAGCCAGATCCTACATTTGTTGCTCTAGCTCAAGATAGCGTGACCAAACTCACCGGCGGCAAAGCCGTTGATTCTCCTGAA
TCGTCAAAGAAAGAAGAATAG
AA sequence
>Lus10033833 pacid=23172801 polypeptide=Lus10033833 locus=Lus10033833.g ID=Lus10033833.BGIv1.0 annot-version=v1.0
MSGVVQKFFITSMLMWMAPIAILYAFNHNLLPGITKMSPHSLTLVSGFVAVISVNIMIAFYICMAMKEPVDKHEPDPTFVALAQDSVTKLTGGKAVDSPE
SSKKEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G05780 Vacuolar ATPase assembly integ... Lus10033833
[exp]
0 1
AT1G60490 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, ... Lus10030605
[exp]
1.4 0.9100
AT3G62720 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylo... Lus10037514
[exp]
4.9 0.8875
AT5G45420 MYB maMYB membrane anchored MYB, Duplica... Lus10039841
[exp]
6.2 0.9053
AT2G45260 Plant protein of unknown funct... Lus10030291
[exp]
6.6 0.8837
AT4G09670 Oxidoreductase family protein ... Lus10013633
[exp]
7.0 0.8888
AT3G55830 EPC1 ECTOPICALLY PARTING CELLS, Nuc... Lus10027392
[exp]
8.5 0.8817
AT2G18840 Integral membrane Yip1 family ... Lus10025478
[exp]
8.7 0.9010
AT1G03350 BSD domain-containing protein ... Lus10029636
[exp]
9.2 0.8891
AT1G79870 D-isomer specific 2-hydroxyaci... Lus10025796
[exp]
9.5 0.8839
AT5G42090 Lung seven transmembrane recep... Lus10033235
[exp]
9.6 0.8981

Lus10033833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.