Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05010 391 / 2e-137 Protein of unknown function, transmembrane-40 (.1) AT5G27210 379 / 9e-133 Protein of unknown function, transmembrane-40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018985 [exp] 571 / 0 AT3G05010 417 / 9e-148 Protein of unknown function, transmembrane-40 (.1) Lus10018984 [exp] 292 / 5e-100 AT5G27210 206 / 9e-67 Protein of unknown function, transmembrane-40 (.1) Lus10040523 [exp] 284 / 3e-95 AT3G05010 327 / 1e-112 Protein of unknown function, transmembrane-40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031200 [exp] 442 / 1e-157 AT3G05010 431 / 1e-153 Protein of unknown function, transmembrane-40 (.1) Potri.005G044700 [exp] 434 / 1e-154 AT3G05010 431 / 2e-153 Protein of unknown function, transmembrane-40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10160 [flax] [poplar] Tmemb_40 Predicted membrane protein
Representative CDS sequence Show only first row Show all	>Lus10033835 pacid=23172838 polypeptide=Lus10033835 locus=Lus10033835.g ID=Lus10033835.BGIv1.0 annot-version=v1.0 ATGCGCAATCTCGGGGAACTTCTTCTCCCAGATTCTCAAGTTCCATCGATCTCGCTTCCCCAAAACCCTAATTCGACCTTCCACGGAGCGGCCTTCAATA CCCCAGGATCCTTCAATTGGCTGTTCCACTGCCACGGTTTTTTCCACAATGTCACTTTAATTCTAGCTTCCCTCGGTTTCGTGCTCTACCTCGCTTTCCA GGCCAAGAAGAGTTTCACCAAGCTCTCCAATGGCCGATCGCATATCATGGTCGCCTATTACGGGAGTCTCTGGCTCGTTAGCTTGCTCAACCTTTGTTGG TCGCTCTTACAGGCATTAGAGTGCACCCCTGGAAAGGAACAAACTTGGAATGTGCTATCGCTGTTTACGACATCAGGAATGTTGTTCCTGGAAGTTAGCT TGATCGCCTTTTTGCTCCAAGGAAATTATGCGAGCGGGTTGGAGGCCTTGACAAGGACTTTTGCTATCTCAGCGCTTGTTGTTGGGCTAGACATACTTCT CAAGGCACTATACTTGTTCGGGCTGGGGATTCCGTTGTTCATTGACATTGGTGAGCAGTCCAATGGTATGAAGTGGGGGCTTTGGGTTGTCCATCGACTA GTTCTTACTGCAGTATATGGCTCTATCCTTTTCATGTATCATTCCAAGTGGAGGGAAAGGTTGCCTGCAAGACCTGCGTTCTACAAGTACATCGTGATCA TGTTTACGTTGAATGCACTAGCGCTGTTTGCATGCGGGCTTAGCGGGAATGGATCTGGTTTCGGTTACTGGCTGTACAGCACTACAATTGTGGCCTACCA TGCCTTGTACCTCCCTCTGATATACATAACCTTTTTGGCAGACTTTTTCCAGGAAGAAGATTTGCATCTTGAGAATGTATACTACTCAGAGATGAAAGAT GCTGGTTTCTTCGATGCCGATTGGGAATAA
AA sequence Show only first row Show all	>Lus10033835 pacid=23172838 polypeptide=Lus10033835 locus=Lus10033835.g ID=Lus10033835.BGIv1.0 annot-version=v1.0 MRNLGELLLPDSQVPSISLPQNPNSTFHGAAFNTPGSFNWLFHCHGFFHNVTLILASLGFVLYLAFQAKKSFTKLSNGRSHIMVAYYGSLWLVSLLNLCW SLLQALECTPGKEQTWNVLSLFTTSGMLFLEVSLIAFLLQGNYASGLEALTRTFAISALVVGLDILLKALYLFGLGIPLFIDIGEQSNGMKWGLWVVHRL VLTAVYGSILFMYHSKWRERLPARPAFYKYIVIMFTLNALALFACGLSGNGSGFGYWLYSTTIVAYHALYLPLIYITFLADFFQEEDLHLENVYYSEMKD AGFFDADWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	0	1
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	1.0	0.8972
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	2.0	0.8891
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	2.2	0.8798
AT4G13530			unknown protein		Lus10030342 [exp]	3.7	0.8936
AT1G36980			unknown protein		Lus10035779 [exp]	3.9	0.8903
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10035322 [exp]	4.7	0.8557
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10010328 [exp]	4.7	0.8304
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002018 [exp]	5.3	0.8433
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10027172 [exp]	7.4	0.8054
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	8.7	0.8278

Compare expression of checked genes

Lus10033835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.