Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25050 117 / 1e-34 ACP4 acyl carrier protein 4 (.1.2) AT3G05020 110 / 5e-32 ACP1 acyl carrier protein 1 (.1) AT1G54580 108 / 4e-31 ACP2 acyl carrier protein 2 (.1) AT1G54630 107 / 9e-31 ACP3 acyl carrier protein 3 (.1.2) AT5G27200 107 / 1e-30 ACP5 acyl carrier protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018986 [exp] 226 / 8e-78 AT4G25050 136 / 3e-42 acyl carrier protein 4 (.1.2) Lus10038636 [exp] 117 / 1e-34 AT4G25050 134 / 3e-41 acyl carrier protein 4 (.1.2) Lus10038635 [exp] 117 / 1e-34 AT4G25050 134 / 3e-41 acyl carrier protein 4 (.1.2) Lus10037908 [exp] 116 / 3e-34 AT4G25050 132 / 8e-41 acyl carrier protein 4 (.1.2) Lus10037910 [exp] 115 / 1e-33 AT4G25050 130 / 4e-40 acyl carrier protein 4 (.1.2) Lus10019500 [exp] 37 / 0.0007 AT2G44620 186 / 1e-62 mitochondrial acyl carrier protein 1 (.1) Lus10043348 [exp] 37 / 0.0007 AT2G44620 186 / 1e-62 mitochondrial acyl carrier protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031300 [exp] 157 / 2e-50 AT3G05020 142 / 1e-44 acyl carrier protein 1 (.1) Potri.005G044800 [exp] 151 / 4e-48 AT5G27200 146 / 5e-46 acyl carrier protein 5 (.1) Potri.015G104500 [exp] 115 / 4e-34 AT4G25050 122 / 2e-36 acyl carrier protein 4 (.1.2) Potri.012G105300 [exp] 112 / 1e-32 AT4G25050 107 / 8e-31 acyl carrier protein 4 (.1.2) Potri.006G217800 [exp] 77 / 7e-19 AT1G54630 94 / 2e-25 acyl carrier protein 3 (.1.2) Potri.013G084500 [exp] 40 / 5e-05 AT1G65290 188 / 5e-63 mitochondrial acyl carrier protein 2 (.1) Potri.019G055300 [exp] 38 / 0.0004 AT1G65290 196 / 6e-66 mitochondrial acyl carrier protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0314 [flax] [poplar] PP-binding PF00550 [flax] [poplar] PP-binding Phosphopantetheine attachment site
Representative CDS sequence Show only first row Show all	>Lus10033836 pacid=23172771 polypeptide=Lus10033836 locus=Lus10033836.g ID=Lus10033836.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTTCTTCTTCCTTCATCTCCCTCAACTCTCGCCCTACTCCGGGCCTGAGCAGGATCTCCGGCGTCAAATTGGCTTCAAATCAGGGAGTTG TGTCCTTTGGCCGGCGCACAGTTGTTCCAGCTCGCCTCCGGATCTCCTGCGCCGCCAAGCCTGATACGGTGGAGAAGGTATGCACCATCGTGAAGAAGCA GCTGGCGCTGTCGCCTGAGACCGTTGTGACCGGCGAATCAAAGTTCTCAGCACTTGGTGCCGATTCGCTCGACACGGTTGAAATCGTGATGGGGCTTGAA GAGGAATTCGGCATCAGCGTTGAAGAGGAGAGCGCTCAGTCCATAGCCACAGTTCAAGACGCTGCTGACCTTATCGAAGACCTTGTTGAGAAGAAAGCTT GA
AA sequence Show only first row Show all	>Lus10033836 pacid=23172771 polypeptide=Lus10033836 locus=Lus10033836.g ID=Lus10033836.BGIv1.0 annot-version=v1.0 MAAASSSFISLNSRPTPGLSRISGVKLASNQGVVSFGRRTVVPARLRISCAAKPDTVEKVCTIVKKQLALSPETVVTGESKFSALGADSLDTVEIVMGLE EEFGISVEEESAQSIATVQDAADLIEDLVEKKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10033836 [exp]	0	1
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026830 [exp]	4.2	0.8791
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10034538 [exp]	17.9	0.8314
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	18.2	0.8704
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	24.2	0.8660
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	24.9	0.7732
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	27.4	0.8525
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10022211 [exp]	28.4	0.7737
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	29.2	0.8618
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10026917 [exp]	30.6	0.8331
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	30.9	0.8543

Compare expression of checked genes

Lus10033836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.