Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08820 177 / 2e-50 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT3G60600 149 / 1e-41 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 145 / 3e-40 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT2G45140 139 / 9e-38 PVA12 plant VAP homolog 12 (.1) AT5G47180 129 / 1e-34 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT2G23830 126 / 4e-34 PapD-like superfamily protein (.1) AT1G51270 123 / 7e-30 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010360 [exp] 158 / 5e-45 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 153 / 6e-43 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 152 / 4e-42 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 149 / 3e-41 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10028937 [exp] 151 / 7e-40 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10015885 [exp] 141 / 2e-38 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10009279 [exp] 138 / 4e-34 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10000591 [exp] 119 / 1e-30 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10000032 [exp] 67 / 2e-13 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031400 [exp] 268 / 2e-85 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.005G044900 [exp] 248 / 1e-77 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.002G144000 [exp] 153 / 3e-43 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.003G076100 [exp] 149 / 2e-41 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 147 / 1e-40 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 146 / 2e-40 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.002G144800 [exp] 145 / 4e-40 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.010G031601 [exp] 133 / 8e-35 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1) Potri.003G082500 [exp] 125 / 7e-33 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 120 / 3e-31 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10033837 pacid=23172832 polypeptide=Lus10033837 locus=Lus10033837.g ID=Lus10033837.BGIv1.0 annot-version=v1.0 ATGAGAGTGCGAATCGAGCGGCGAGGTTGTGGGCTCGAGGTTATGTGTTTGGGCCTATCATTACCGTCCCATGAAGGCTTTTGCTATATATGCAGTATTA TGGGGCATACGGATAAATACTGCGACCTCAGATTCACGATCCCAGCTTACTTATTTGTCCGTAAGTGGGGAAGTTTTCTTCTGGTCAAGGAAAAATCAAA GCAGGAGACCCTTGGAGGAAGATGTCTAATTGAGGATGAAGAAGGGAAGGGCGAGGGGAACTACAATCAGGCTGAAACAGTAAGCAAACCTGCAAATGAA ATCGGAACTGAGAGAGAGTTTGCTGTTGCATGCCAGGAGAACGTGCAAAAGGAGTCAATCATGGCTACGCAGCTCGTGGATATTCAACCCAAGGAACTGA AATTTACAGTTGCACTGAAGAAGCAAAGCTCATGTGCAGTCCGGCTTACAAATAACTCCTATCACACTGTTGCATTCAAGGTCAAAACTACTTCCCCAAA GAAGTATTGTGTGCGTCCAAATGTTGGAGTTATATTACCCAAGTCTATTTGCGAATTTACAGTTACCATGCAAGCTCAGAAGGTTGCTCCTCCTGATATG ACGTGCAAAGACAAGTTCTTAATTCAGACTACAGTCGTCCCTATTGGTACATCTGATGAGGACATAGCACCTCTCATGTTCTCCAAAGAGAATGGTGGGC ATATTGAAGAAACAAAGCTGAGAGTTGTCCTTGTCAGCCAACTCAGTCCTCCTGAATCACCCTTGTCATCTCCAGAGAATGAGTCGTTGAAACCGATCAA CCAGCTCCATTTGGAAGCCCCAGTGTTCACAAGTATTGACAGTGCCACTCAAGTCCACCCATTTATGGAGGATGTGGAATTCAATCAGGGGTTCGATGCT GCCAAAAATATTAGTTCAAAGCCTAAGAAGGTTGTGGCAGAAGATGAAGAGGAGGTAAAGCCAATAAACCTGAATGGTTTAGTTCCTGCTAAGGACGATG CTGACGATGAGGACTTTACTAAACCGAAGGTTGATGAGGTCAGGAGGGAGAAAAATGGCACTGATGAATGGAAGGCAGTAAATGAGTTTACATCAGTCAA GGCTGCGGTTAAAAGCAGCGAGTTAAAGGCAGCTAAGGGTGAAGAGGGGACGCAAGATAACTATGCCACTGACAGCGTGCAACTAAAAGCAGAAAAGGAT GCCGAGCGGCCTCCACAAGACGACGTAAAGTTCATCACAGTGAAGGAACCGCAACAGTTGGTGAATAATATCAATGAAACAAAGTTAGTGAATGAAATAG AGACGATGAAGACGAAACTAGATGCCCTGGAAGTGAAGTTCAACGAGGCTCAATCAACTATTTCAAAACTGATGGAGGAGAGGAAATCCACAAATGGGGA GAGGAAAAGCTTGAAAGAAGAAGTTGCACTGTTGAAAACTGGGAAGGTAGGCATGGCAACGGTAGAAGCAGAAGTAGGGATTCCTATTCTACACGTAGTG ATCGTGGCACTCATCAGTATCCTGCTTGGATATCTTCTACACGGTTGA
AA sequence Show only first row Show all	>Lus10033837 pacid=23172832 polypeptide=Lus10033837 locus=Lus10033837.g ID=Lus10033837.BGIv1.0 annot-version=v1.0 MRVRIERRGCGLEVMCLGLSLPSHEGFCYICSIMGHTDKYCDLRFTIPAYLFVRKWGSFLLVKEKSKQETLGGRCLIEDEEGKGEGNYNQAETVSKPANE IGTEREFAVACQENVQKESIMATQLVDIQPKELKFTVALKKQSSCAVRLTNNSYHTVAFKVKTTSPKKYCVRPNVGVILPKSICEFTVTMQAQKVAPPDM TCKDKFLIQTTVVPIGTSDEDIAPLMFSKENGGHIEETKLRVVLVSQLSPPESPLSSPENESLKPINQLHLEAPVFTSIDSATQVHPFMEDVEFNQGFDA AKNISSKPKKVVAEDEEEVKPINLNGLVPAKDDADDEDFTKPKVDEVRREKNGTDEWKAVNEFTSVKAAVKSSELKAAKGEEGTQDNYATDSVQLKAEKD AERPPQDDVKFITVKEPQQLVNNINETKLVNEIETMKTKLDALEVKFNEAQSTISKLMEERKSTNGERKSLKEEVALLKTGKVGMATVEAEVGIPILHVV IVALISILLGYLLHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	0	1
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10025339 [exp]	2.4	0.7940
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10013502 [exp]	7.6	0.7344
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	8.1	0.7844
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	8.6	0.8103
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	8.7	0.7781
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	10.2	0.7688
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	14.9	0.7535
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	15.3	0.7203
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	15.9	0.7470
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	15.9	0.7699

Compare expression of checked genes

Lus10033837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.