Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22800 501 / 2e-179 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018987 [exp] 659 / 0 AT1G22800 500 / 5e-179 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G101700 [exp] 530 / 0 AT1G22800 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G101900 [exp] 315 / 2e-108 AT1G22800 311 / 9e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10033838 pacid=23172887 polypeptide=Lus10033838 locus=Lus10033838.g ID=Lus10033838.BGIv1.0 annot-version=v1.0 ATGAGAAGATCGTTGTCCCTCTATAGAAGCGGTTCGAGGACCAGAGTTCCAACTGCAACCATCACCGGAACGGTCCGTGATTTCGTGGCTTCCGCTTCAT TTAGCACATACAGCGACGGCGGTGGGGATGGAATACCCAGCGCTTCGAAAGTCAAAATTTTCGACCGAGAACTCAAGCAGACACAACGTGACCGAGCTGC GTGGCTGATGAATCCCAAAGATCCTCTTACCGATGCTGTTGCTGAGAATCTGCTTGATCGTTTGGAGGATTGTAAGAGGACGTTCCCCACAGCATTATGC CTGGGAGGTTCGTTGGCAGCTATCAGACGTCAATTGCGTGGCCAAGGTTCTATTGAAAAGCTCATTATGATGGACGCTTCCCATGACATAATCAAAGTAT GTAGACAAGCTAGTCATGGTGCTAATGATAATATTGAAACATCATTTGTGGTGGGTGATGAAGAGTTTCTACCCATGAAAGAAAGTTCACTAGATTTAGT GATCAGCTGTTTGGGGCTCCACTGGACGAATGATCTTCCCGGAGCCATGATACAGGCTAAGTTAGCACTGAAACCGGACGGCCTATTTTTGGCAGCTATT CTTGGTGGAGAAACATTGAAGGAGTTGAGAACAGCCTGCACCGTGGCTCAGATGGAGCGTGAAGGAGGCATCAGTCCTCGAATGTCGCCTTTGGCACAGG TTCGCGATGCAGGTAACCTGTTGACAAGAGCAGGGTTCACTCTCCCAGGTGTAGATGTTGATGAGTACACAGTTAAGTACCCAAGTGCTCTGGAACTGAT AGAGCATTTGCGTGCAATGGGAGAAACGAATGCTCTTCTTCAGCGAAGCAATATCCTGAAGAGAGAAACAGCGCTGGCAACTGCTGCAGTCTACGAGTCG ATGTTTGGAGCAGAAGATGGGAGCATCCCAGCTACATTCCAGGTGATTTACATGACGGGATGGAAAGAGCATTATTCGCAACAGAAGCCGAAAAGGAGGG GATCTGCCACCGTGTCTTTCCAAGACCTTCATAAGCACTTAGGCGGCGATAGTTGA
AA sequence Show only first row Show all	>Lus10033838 pacid=23172887 polypeptide=Lus10033838 locus=Lus10033838.g ID=Lus10033838.BGIv1.0 annot-version=v1.0 MRRSLSLYRSGSRTRVPTATITGTVRDFVASASFSTYSDGGGDGIPSASKVKIFDRELKQTQRDRAAWLMNPKDPLTDAVAENLLDRLEDCKRTFPTALC LGGSLAAIRRQLRGQGSIEKLIMMDASHDIIKVCRQASHGANDNIETSFVVGDEEFLPMKESSLDLVISCLGLHWTNDLPGAMIQAKLALKPDGLFLAAI LGGETLKELRTACTVAQMEREGGISPRMSPLAQVRDAGNLLTRAGFTLPGVDVDEYTVKYPSALELIEHLRAMGETNALLQRSNILKRETALATAAVYES MFGAEDGSIPATFQVIYMTGWKEHYSQQKPKRRGSATVSFQDLHKHLGGDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	0	1
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	1.0	0.8808
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Lus10017736 [exp]	3.0	0.8359
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	3.2	0.8530
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	4.1	0.8254
AT5G41980			unknown protein		Lus10024452 [exp]	4.7	0.8319
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	6.3	0.8549
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	6.5	0.8668
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	7.0	0.8444
AT4G20310			Peptidase M50 family protein (...		Lus10001219 [exp]	7.7	0.8195
AT2G24530			unknown protein		Lus10042444 [exp]	8.7	0.8229

Compare expression of checked genes

Lus10033838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.