Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10620 276 / 9e-95 ATNUDX26 nudix hydrolase homolog 26 (.1) AT5G06340 221 / 1e-72 ATNUDX27 nudix hydrolase homolog 27 (.1) AT1G30110 187 / 6e-60 ATNUDX25 nudix hydrolase homolog 25 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018988 [exp] 370 / 7e-132 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10021279 [exp] 221 / 1e-72 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 219 / 8e-72 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 214 / 4e-70 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 207 / 6e-67 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10016955 [exp] 202 / 5e-65 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 196 / 2e-62 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10003714 [exp] 181 / 1e-57 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 161 / 3e-45 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G242100 [exp] 286 / 3e-98 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G017900 [exp] 279 / 2e-95 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.006G203700 [exp] 236 / 2e-78 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 231 / 1e-76 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.008G130100 [exp] 199 / 1e-64 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 195 / 3e-63 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10033839 pacid=23172827 polypeptide=Lus10033839 locus=Lus10033839.g ID=Lus10033839.BGIv1.0 annot-version=v1.0 ATGCTTTCCGTACCAACTCTCTCCTTCTCAAGATACCCTTCCAAGCTCTACGAATTCACCAAGCTGCCACTGTTCTCTCCCTCGTTGAAGATCTGCACCA TCCCAATACAGTCCAGAGCTTCATCAGTAGCAGCATCTTCGAGAATCTCGTCATCCATGGAGTCTCCCCCTGAAGGATACAGAAGAAACGTGGGGATCTG TCTCATCAACCCATCTAAGAAGATATTTTCCGCGTCAAGACTGGATATACCGGACGCTTGGCAGATGCCCCAGGTCGAAATTCGAACCCCTTCATTTTGG TTGCCTTCTGTAGTAACTGATCTAATGGAATCAATTGAAATGCTGTCTGGTGGCATTGATGAGGGTGAAGATCCAAAAGTTGCTGCTCTCAGGGAACTAA AAGAAGAGACGGGAGTCAGCTCAGCTGAGATTCTTGCTGAGGCACCGCATTGGTTGACGTATGACTTCCCACCACAAGTGAGGGAAAAGCTTAAAGTACA ATGGGGAACTGACTGGAAAGGTCAAGCACAAAAATGGTTTCTCCTGAAATTTACAGGCAAGGAAGAGGAGGAGATCAATCTGTTGGGAGATGGAAGCGAG AAACCCGAGTTTGGGGAGTGGTTATGGATGTCACCTGAAGAAGTAATTGATCGAGCGGTAGATTTCAAGAAGCCTGTGTACAAGCAAGTGTTGGCAGCTT TCTCCCCTCATCTTCAGTAG
AA sequence Show only first row Show all	>Lus10033839 pacid=23172827 polypeptide=Lus10033839 locus=Lus10033839.g ID=Lus10033839.BGIv1.0 annot-version=v1.0 MLSVPTLSFSRYPSKLYEFTKLPLFSPSLKICTIPIQSRASSVAASSRISSSMESPPEGYRRNVGICLINPSKKIFSASRLDIPDAWQMPQVEIRTPSFW LPSVVTDLMESIEMLSGGIDEGEDPKVAALRELKEETGVSSAEILAEAPHWLTYDFPPQVREKLKVQWGTDWKGQAQKWFLLKFTGKEEEEINLLGDGSE KPEFGEWLWMSPEEVIDRAVDFKKPVYKQVLAAFSPHLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	0	1
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	2.6	0.7974
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	4.2	0.7849
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	5.5	0.7525
AT4G19450			Major facilitator superfamily ...		Lus10034738 [exp]	6.5	0.7436
AT4G26310			elongation factor P (EF-P) fam...		Lus10030360 [exp]	8.7	0.7830
AT1G17665			unknown protein		Lus10006153 [exp]	11.2	0.7160
AT3G04950			unknown protein		Lus10000934 [exp]	11.5	0.7219
AT1G30130			unknown protein		Lus10028119 [exp]	11.7	0.6988
AT3G19650			cyclin-related (.1)		Lus10002122 [exp]	14.0	0.7594
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	16.6	0.7539

Compare expression of checked genes

Lus10033839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.