Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 789 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 756 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 696 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G55470 577 / 0 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT1G79610 171 / 1e-46 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 150 / 2e-39 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT2G01980 60 / 4e-09 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 57 / 4e-08 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004141 [exp] 923 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 911 / 0 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 814 / 0 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 720 / 0 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 692 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 690 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 574 / 0 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10014891 [exp] 436 / 8e-150 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10038727 [exp] 143 / 3e-36 AT1G79610 749 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031700 [exp] 850 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.005G045100 [exp] 849 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 779 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 704 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 594 / 0 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 155 / 4e-41 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Potri.008G140700 [exp] 53 / 5e-07 AT2G01980 1345 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10033840 pacid=23172825 polypeptide=Lus10033840 locus=Lus10033840.g ID=Lus10033840.BGIv1.0 annot-version=v1.0 ATGGAAGCTGTAAGCTCAATTACGACGAGGCTGCAGGCGCTTTCGACGTCTGACCATGCGTCGGTGGTGTCAATGAACTTGTTCGTGGCGCTGCTTTGTA CTTGTATCGTCATTGGCCATCTTCTCGAGGAGAATCGTTGGATGAATGAGTCTATTACTGCTCTTTTGATCGGTGTGTGCACTGGGGTTGTGATTCTGCT GGTTAGTGGAGGAAAAAGCTCCCACCTATTGGTCTTCAGCGAGGATCTTTTCTTCATCTATCTCCTTCCACCTATCATTTTCAATGCCGGGTTCCAGGTG AAAAAGAAGCAGTTTTTCCGGAATTTCATCACAATCATGTTGTTTGGCGCCGTTGGAACATTAATATCCTGCTTCGTTATATCCATAGGCGCCATTCAGA TCTTCAGTAGAATGGACATTGGTGAATTTGACATTGGAGACTATATAGCACTCGGAGCAATATTCGCAGCAACAGATTCCGTATGCACGTTGCAGATTCT TAATCAGGATCAGACCCCTCTACTTTACAGTCTTGTATTCGGGGAAGGTGTCGTGAACGACGCCACGTCAGTGGTGCTTTTTAATGCAATTCAGGGCTTT GATCTTGTCAATCTTACTCCACACATTGGTTTGGAGTTCATTGGCAACTTCTTGTATTTGTTTATCACAAGTACTGTATTAGGAGCTGCGACTGGATTGA TCAGTGCTTACATCATCAAAAAGCTCTACTTTGGAAGGCATTCAACGGATAGGGAGGTTGCTCTCATGATTCTTATGGCATACCTTTCATATATGCTGGC TGAGCTATTCTACTTGAGTGGGATTCTTACAGTATTCTTTTGTGGAATTGTGATGTCCCATTATACTTGGCACAATGTGACTGAGAGCTCAAGAGTAACA ACAAAGCATGCATTTGCAACCTTGTCGTTTGTCTCTGAGATATTCATCTTTCTATACGTCGGAATGGATGCCTTGGACATTGAGAAGTGGCACGCTGTGA GCGACAGCCCTGGAACATCAGTTGCTGTGAGTTCAATATTGTTAGCCCTTGTTCTGCTTGGAAGAGCAGCTTTTGTTTTCCCCTTGTCCTTTTTATCCAA CTTGTCCAAGAAATCACCTAACGATAAGATTGACATCAAGCAGCAAATTGTCATATGGTGGGCTGGCTTAATGAGAGGTGCTGTGTCAATGGCACTTGCA TATAACAAGTTTACGAGTGGAGGGCACACTCAATTGAGGGAGAATGCTATACTGATCACCAGCACCATAATTGTTGTTCTTTTCAGCACAGTGGTGTTTG GTTTGATGACTCAACCTCTTATAAGATTCCTACTGCCAACTGGGCCGAGAAGTCAGACAAGCACGGCCGTTTCTTCACACGATGGGACCCCGAAGTCGAT CACAGTTCCGCTCCTGGGCGAGGCACAGGACTCGTTGGACGATCTGGCTAACCAACACCTCAACGGTGGGTACAGGTTACGTGCCTTGTTGACCACGCCA ACTCACACTGTGCATTACTACTGGCGCAAGTTTGACAATGCGTTCATGAGACCAGTGTTTGGTGGCAGAGGGTTCGTTCCTTTCGTTCCTGGGTCTCCAA CGGAACGGAATTTGCCAGAAAATGAAAATCCATTTCTGTGA
AA sequence Show only first row Show all	>Lus10033840 pacid=23172825 polypeptide=Lus10033840 locus=Lus10033840.g ID=Lus10033840.BGIv1.0 annot-version=v1.0 MEAVSSITTRLQALSTSDHASVVSMNLFVALLCTCIVIGHLLEENRWMNESITALLIGVCTGVVILLVSGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQV KKKQFFRNFITIMLFGAVGTLISCFVISIGAIQIFSRMDIGEFDIGDYIALGAIFAATDSVCTLQILNQDQTPLLYSLVFGEGVVNDATSVVLFNAIQGF DLVNLTPHIGLEFIGNFLYLFITSTVLGAATGLISAYIIKKLYFGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVT TKHAFATLSFVSEIFIFLYVGMDALDIEKWHAVSDSPGTSVAVSSILLALVLLGRAAFVFPLSFLSNLSKKSPNDKIDIKQQIVIWWAGLMRGAVSMALA YNKFTSGGHTQLRENAILITSTIIVVLFSTVVFGLMTQPLIRFLLPTGPRSQTSTAVSSHDGTPKSITVPLLGEAQDSLDDLANQHLNGGYRLRALLTTP THTVHYYWRKFDNAFMRPVFGGRGFVPFVPGSPTERNLPENENPFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	0	1
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	1.4	0.9075
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	1.7	0.9110
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	4.2	0.8719
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	5.0	0.8787
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	6.2	0.8913
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	7.7	0.8893
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	7.9	0.8746
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	8.8	0.8651
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10038833 [exp]	10.7	0.8464
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	11.0	0.8707

Compare expression of checked genes

Lus10033840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.