Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34970 853 / 0 Trimeric LpxA-like enzyme (.1) AT4G18300 768 / 0 Trimeric LpxA-like enzyme (.1) AT3G02270 682 / 0 Trimeric LpxA-like enzyme (.1) AT5G19485 66 / 6e-11 transferases;nucleotidyltransferases (.1) AT2G39770 55 / 1e-07 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 49 / 6e-06 Glucose-1-phosphate adenylyltransferase family protein (.1) AT5G36230 49 / 1e-05 ARM repeat superfamily protein (.1) AT2G04650 48 / 3e-05 ADP-glucose pyrophosphorylase family protein (.1) AT1G65220 48 / 3e-05 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018991 [exp] 1347 / 0 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10036081 [exp] 66 / 9e-11 AT5G19485 638 / 0.0 transferases;nucleotidyltransferases (.1) Lus10026802 [exp] 65 / 1e-10 AT5G19485 633 / 0.0 transferases;nucleotidyltransferases (.1) Lus10004699 [exp] 55 / 1e-07 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 55 / 1e-07 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 54 / 2e-07 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 53 / 4e-07 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10029667 [exp] 51 / 5e-07 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10042703 [exp] 51 / 2e-06 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045200 [exp] 1002 / 0 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.009G066400 [exp] 73 / 3e-13 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1) Potri.001G271800 [exp] 58 / 1e-08 AT5G19485 630 / 0.0 transferases;nucleotidyltransferases (.1) Potri.006G090300 [exp] 57 / 2e-08 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 56 / 5e-08 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 56 / 8e-08 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 53 / 5e-07 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.013G085600 [exp] 50 / 5e-06 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.019G053600 [exp] 50 / 6e-06 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1) Potri.012G075500 [exp] 47 / 4e-05 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase CL0020 [flax] [poplar] TPR PF02020 [flax] [poplar] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Lus10033841 pacid=23172759 polypeptide=Lus10033841 locus=Lus10033841.g ID=Lus10033841.BGIv1.0 annot-version=v1.0 ATGGGGGCGCAGAAGAAAGGATCACATAGGGTCACAGAAGAGCCTGAAGAATTGGCTCGGAGTTCACTCCAGGCCATTCTTTTGGCCGACAGCTTCACTA CAAAATTCCGCCCCATCACTCTCGAGCGCCCAAAGGTTCTTCTGCCGTTGGTAAATGTTCCGATGATAGATTACACTCTTTCTTGGCTGGAATGGGCTGG GGTTGAGGAGGTTTTTGTATTCTGCTGCGCCCATTCTGGGCAAGTCAAAAATTATTTGGACAACTCTGAATGGCGCAATCAGCCTAACTTCACTGTCACC ACTATCGAATCTAACAATTCTATCAGCGCTGGAGATGCTCTGAGGTTTATATATGAGCGCAATGTGATACATGGGGACTTTGTCCTAGTCAGTGGGGATA CGGTGAGCAACATGCCACTGACCCAGGCAGTTAAAGAACATAAGGATAGAAGAAAGAAGGACAGCAATGCAGTCATGACCATGGTTATTAAAAAATCACA GCCTTCACCAATCATCCACCAGTCGCGTCTTGGTACTGATGAGCTGTTCATGGCCATTGATCCTGATACCAAGCAACTTCTCTATTATGAGGACAGAGAA GAGCACCTAAAAGTAGTTATATCTCTTGACAATTCGTTACTTGCAGACAGTTCTTCTATCTCGCTCCATAATGATAAGCAGGCTAGTTCTACAGGCTTTG ATTGCTACATAGATATATGCTCCCAAGAGGTGCTGAGTTTGTTTACTGATAATTTTGACTATCAACATCTGCGGCGTCATTTCGTGAAAGGCTTGCTAGT TGATGATATAATGGGTTACAAAATATTTACTCATGAAATTCACTCTAGCTATGCGGCTAGGATTGATAACTATAAGAGCTATGACACGATCAGTAAGGAT ATCATTCAGAGGTGGACATATCCGTTTGTGCCAGATGTTAATTTTTCGGGAAATTGCAATGCTAAACTTGAAAGAGAGGGGATGTATCGGGAACCAGGGA CCAAAATTGGGGACAATTCTAGTGTTACTCATTCTGTCATTGGAGAAGGATGTACTATTGGATCTAATGTTTCCGTAGTGGGATCATACATATGGAACAA TGTTACCATAGAAGATGGGTGTAACGTACAAAATGCAATAGTATGTGACGGCGTGATCATAAAAGAAGGTGCAACTTTGGAACCTGGGGTTGTATTGTCT TTCAAGGTTGTCATTGGACGAGATTTTGTTGTCCCTGCCTATTCGAAAGTGTCTCTGTTTCAGCAGCCAACTGTGGAAGATAGTGATGAAGAATTGGAGT ATGCTGATAACAGCAGTAGAGCTATAGATCCATCCATTGTCGATCTTAGTGACAACTTGAATGAGGAGATACTATCTGAAGCATCTCAGACAAAGCATTG GCCCAGTTCACAGCTTGGGCCTGGTGGGGCTGGTTATGTTTGGTCGACCTGCGATGGAGGTTACGATGAAGAGTGGAAACACTCTGTTGCACCAATTCCG GCACAGAAACTCTCCGAGGCATTGCTAGCCATAGATGAGGATTTAGAGACCTTAAATGTTGATGACAGTGCTCTAGCAGTTTCTGGAGAGCCAGAACCTG GCACCTCTGGCAATGAATCTGACGATATGGATGATTACAAGGATGACTCTTTTTATTTTGAGCAAGAGGCTGAAGCAACCTTCTTGAGAGCTGTTAATGA CAATATTGCAGTCAAGGACTTAGTCCTTGAAATGAATTCACTACGGTTATCATATAACATGACATCTGCTGACTGCACTGGAGCCTTATTTTATGCAATG ATGAAACAGGCTTTGGAATCTCCACACACCACAGCTGATGAACTGTGGAAGAATGTTGCTAATGTTACGAGCAAATGGGAGAAACTACTCAAAACATATG CTAAAGAAATAGATGAGCAGATTGAGCTGATAATGAAACTAGAAGATACATGTCATGAATCCCCCGAGTTGTCACCAATTTTTTCTCGGATTTTGAGACA TCTATATGAGGAGGAGATCGTAGAAGAGGATGCTATATTGAAGTGGGATGACGAGCGGAAAGATGCAGATGAATCAGACAGGATTTTCGTCAAACAGGCA GCGGTGTTTGTTAAAGAACTGTTATCTGATGGCGAAAGAAATAATTGCACAAACAAATTCTTTGCGAGGTTCTTGGATGTGTATGGTTTGATGAAGGATT CGGATATGCTCTGCAGTACTAGAATTGTTGCTGGAGAAGTTGAGATGCAATTAACTCGATTGGATTCGGATATGCTCTGCTCGATCTTTCCCCTTCTTCG GTTGAATTACACCACAAAATAA
AA sequence Show only first row Show all	>Lus10033841 pacid=23172759 polypeptide=Lus10033841 locus=Lus10033841.g ID=Lus10033841.BGIv1.0 annot-version=v1.0 MGAQKKGSHRVTEEPEELARSSLQAILLADSFTTKFRPITLERPKVLLPLVNVPMIDYTLSWLEWAGVEEVFVFCCAHSGQVKNYLDNSEWRNQPNFTVT TIESNNSISAGDALRFIYERNVIHGDFVLVSGDTVSNMPLTQAVKEHKDRRKKDSNAVMTMVIKKSQPSPIIHQSRLGTDELFMAIDPDTKQLLYYEDRE EHLKVVISLDNSLLADSSSISLHNDKQASSTGFDCYIDICSQEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIHSSYAARIDNYKSYDTISKD IIQRWTYPFVPDVNFSGNCNAKLEREGMYREPGTKIGDNSSVTHSVIGEGCTIGSNVSVVGSYIWNNVTIEDGCNVQNAIVCDGVIIKEGATLEPGVVLS FKVVIGRDFVVPAYSKVSLFQQPTVEDSDEELEYADNSSRAIDPSIVDLSDNLNEEILSEASQTKHWPSSQLGPGGAGYVWSTCDGGYDEEWKHSVAPIP AQKLSEALLAIDEDLETLNVDDSALAVSGEPEPGTSGNESDDMDDYKDDSFYFEQEAEATFLRAVNDNIAVKDLVLEMNSLRLSYNMTSADCTGALFYAM MKQALESPHTTADELWKNVANVTSKWEKLLKTYAKEIDEQIELIMKLEDTCHESPELSPIFSRILRHLYEEEIVEEDAILKWDDERKDADESDRIFVKQA AVFVKELLSDGERNNCTNKFFARFLDVYGLMKDSDMLCSTRIVAGEVEMQLTRLDSDMLCSIFPLLRLNYTTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10033841 [exp]	0	1
AT2G44040			Dihydrodipicolinate reductase,...		Lus10024047 [exp]	5.3	0.8592
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	13.2	0.8824
AT1G23280			MAK16 protein-related (.1)		Lus10000846 [exp]	13.7	0.8712
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	13.9	0.8165
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	17.2	0.8697
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	19.1	0.8682
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	20.2	0.8646
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	21.8	0.8773
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	22.7	0.8755
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10004986 [exp]	23.2	0.8079

Compare expression of checked genes

Lus10033841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.