Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13050 114 / 6e-29 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018992 [exp] 278 / 3e-91 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027576 [exp] 125 / 8e-34 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 125 / 6e-33 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 122 / 2e-31 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 104 / 2e-25 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 99 / 5e-23 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 97 / 9e-23 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10037295 [exp] 94 / 7e-22 AT3G13050 363 / 1e-121 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10035704 [exp] 81 / 3e-17 AT3G13050 378 / 1e-127 nicotinate transporter, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150700 [exp] 124 / 2e-32 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 121 / 3e-31 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 115 / 2e-29 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 108 / 8e-27 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003000 [exp] 107 / 1e-26 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033842 pacid=23172791 polypeptide=Lus10033842 locus=Lus10033842.g ID=Lus10033842.BGIv1.0 annot-version=v1.0 ATGAAGAAGATAGCTCTCACCAATTGCAAATCCCTCCCTGCTGGCTTCCTTGTTCCTGACAATATGAAGAATGGCGAATTGCATTGGACAGGAGCTATGG CTGAAGAAGATCCTGATCATGTAGTAGTAGTCCCGTCATCATCCACTTCAGAAGAGGTCGTCACCGTTCCACTCCTCCCATCACCTGAAAAGCCGATTGC TTTGGACAGACTACCAGGATTCGCTTCCTTATTTAGGCTATTTTCGAAGAGGCTAATACGGACGACATTGCTGTTATGGTTGTTGTATTTCGGGAACTCG TTTGCTTATTATGGAATCATATTACTCACCTTGGAGTTGAGCAGTTGGCAGTCCAAATGCAGCTCAAGTACTCTGCTTGCTCAAGTTCCTCAGAGTACTG GCAACAACCTCTATGTAGATACATTCATCACTAGCTTGGCAGAGCTACCGGGGCTAATTCTATCAGCGGTAATAGTGGACAGAGTTGGCCGCAAGCTCTC AATGGCATTCATGTTTTTCCTAGGTTTCATCTTCCTTATACCTTTACTTTCCTCTCAATCTCCAGTCTTAACGACAGCAGTGCTGTTCGGCGCACGAATT TGTATCTCAGGAACCTTCACTGTTTCTTGCATCTTTGCCCCCAGAGTTATATCCAACTTCTGTGAGGGCAACCGGGGCAGGAGTTGCAAGCTCCATCGGA AGGATCGGAGGGATGGTGTGCCCTCTAGTAGCGGTCGGACTCGTCACTGGTTGGCATCTTATTATGGAAGCAGTTATTCTGTTTGA
AA sequence Show only first row Show all	>Lus10033842 pacid=23172791 polypeptide=Lus10033842 locus=Lus10033842.g ID=Lus10033842.BGIv1.0 annot-version=v1.0 MKKIALTNCKSLPAGFLVPDNMKNGELHWTGAMAEEDPDHVVVVPSSSTSEEVVTVPLLPSPEKPIALDRLPGFASLFRLFSKRLIRTTLLLWLLYFGNS FAYYGIILLTLELSSWQSKCSSSTLLAQVPQSTGNNLYVDTFITSLAELPGLILSAVIVDRVGRKLSMAFMFFLGFIFLIPLLSSQSPVLTTAVLFGARI CISGTFTVSCIFAPRVISNFCEGNRGRSCKLHRKDRRDGVPSSSGRTRHWLASYYGSSYSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033842 [exp]	0	1
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10017712 [exp]	1.4	0.8659
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	5.3	0.8012
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	10.3	0.8418
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	11.9	0.8064
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	12.2	0.7999
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	18.2	0.7852
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	18.5	0.7942
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	24.3	0.7842
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	24.5	0.7927
AT5G16940			carbon-sulfur lyases (.1.2)		Lus10018517 [exp]	26.5	0.7360

Compare expression of checked genes

Lus10033842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.