Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05040 1466 / 0 HST1, HST HASTY 1, HASTY, ARM repeat superfamily protein (.1) AT3G03110 45 / 0.0004 CRM1B, XPO1B exportin 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018994 [exp] 2156 / 0 AT3G05040 1579 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10001714 [exp] 1712 / 0 AT3G05040 1465 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1) Lus10004145 [exp] 1706 / 0 AT3G05040 1460 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032100 [exp] 1700 / 0 AT3G05040 1513 / 0.0 HASTY 1, HASTY, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08389 [flax] [poplar] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Lus10033845 pacid=23172812 polypeptide=Lus10033845 locus=Lus10033845.g ID=Lus10033845.BGIv1.0 annot-version=v1.0 ATGGAAGAGGCAAATAGCTGTCTGGGTGTAGCAAACAATGTTGCTCTTGCCATCGTTGCAGCTCTCGACTGGAACTCCACTCCAGATGCTCGCAAAGCTG CTGTTTCTTACCTTGATTCTGTTAAAACCGGAGATGTACGAGTGTTGGCGAGCACATCATTACTTCTTGTTAAAAGAGATTGGTCTTCCGAAATTCGGTT GCAAGCTTATAAGATGTTGCAGCATTTAGTTCGGTTGCGTTGGGAAGAACTCAGCCCAATAGAGCGTAGAGACTTTGCAAATGTAGCTGTTGAACTGATG TCTGAAATGACAAAACCCAGTGAAGAATGGCCATTAAAGAGTCAAAAAGCTGCACTTGTTGCTGAGATTGTTAGAAGAGAAGGGATAGAACTTTGGCAAG AACTGCTTCCATCTTTGATTTCCCTGTCCAACCAAGGTCCTGTGCAGGCTGAGTTGGTTTCAATGATGCTGAGGTGGCTTCCTGAAGACATTACAGTTCA CAACGAAGATCTGGAAGGTGATCGTCGTCGCCTATTATTAAGGGGCCTTACCCAGTCTTTACCGGAAATTTTTCCATTGCTATACACACTACTGGAAAGG CACTTTGGAGCTGCATTGAGTGAAGCGAGTAGGCAGCAACTGGATGTAGCAAAAGAGCATGCTGCAACTGTAACAGCTACTTTGAATGCGATTAATGCAT ACGCTGACTGGGCTCCTCTGCCTGATCTAGCTAAATTTGGCATAATTCATGGGTGTGGCTTTTTGCTTTCAGCCGTTGATTTCCGTCTTCATGCTTGTGA ATTTTTCAAACTTGTCTCCTCAAGGAAAAGAACAATTGATGCTTCGGTTTCAGAATTTGATTCCGCAATAAGTAGTATCTTTCAGATTTTAATGAATGTA TCTAGAGACTTTCTCTACAAGTCTTCCTCAACTGCTGCTGCTGTGGACGAGAATGAAATTGAGTTTGTTGAATATATATGCGAAAGCATGGTTGCTTTGG GGTCTACTAATTTACAGTGCATTAGTGGAAACAGTTCCATACTATCTATTTATTTACAACAGATGCTGGGCTTTTTCCAACATTATAAACTTGGTCTGCA TTATGAGTCCCTGCTCTTTTGGCTGGCGCTAATGAGGGATTTAGTGTCAAAGTCTAAAGTTACATCAGCATCTGGAGATGGTTCTGATTCTGCTCAGCTT GACAATGAGAAACAAATGATTTTGAATCTTGTAGATGATAATATTTGTAGATCAATACTAGATATCTCTTCCCAGCGTATGCTCAGGAAAGAGAAAGCAT TTCCAGGGGCTTCCTTTGCTCTAGGTACGCTTGAGTTATGGAGTGATGATGTTGAAGGGAAGGGAGACTTTGGCCAGTACCGATCCAAACTGTTGGAACT AATGAGGCTCATGGCATCTTTCAAGCTTATTATAGCTAGTAGTAAAATATCTGACAAAATTATTTCAGTAATTAACATCCCCCTAACTTCGCCTGTGCCG GTTCAGGACCTAGCTGTGATGGAGAGCCTTCAGGTTTCTCTAGAAAATATAGTTACTGTTGTATTTGATGGATCAAATGAATTTGCTGGGGGTAGTTCCG AACTTCATCTTGCAGTATGCAGAATATTTGAAGGTTTGCTTCAGCGGCTTCTTTCTCTAAAATGGATGGAGCCAACTCTTGTGGAAATCTTAGGACACTA TTTAGATGCATTGGGCCCTTTTCTGAAGTACTCTCCTGACGCAGTTGGTGGTGTCATCAACAAACTATTTGAGCTTCTAACATCCCTTCCTCTCGTTATC GAGAACCCCTCAACAACTGATGCGCGGCGTGCAAGGTTACAGATCTGCATGTCATTCATACGAATAGCAAAAGCTGCTGATAAAAGCATTTTGCCTCACA TGAAGGGTATAGCAGATACCATGGGTCATATGCAAAGAGAGGGTTGTTTGCTTCGCAGTGAGCACAATCTTCTGGGAGAAGCATTCCTTGTTATGGCTTC TGCTGCTGGGCTTCAACAACAACACGAGGTTTTGAACTGGTTACTTGAACCTTTGAGCCAGCAGTGGATACAGTTGGATTGGCAGAACAAATATTTGTCT GAACCATTAGGTGTAGTTCGGTTGTTCTTGGATACACCATTAATGTGGTCAATTTTTCACACAGTGGCGTTTTTCGAGAAGGCACTTAAAAGGAGTGGAT TCAAAAAGAGCAATTTATACACACAAAATAGCTCTTCGACAAATCCCCCTATGCATCCATTGAGTCCTCATCTAGCTTGGATGTTGCCTCCTCTCTTAAA ACTGCTTCGTGCTTTGCATGCCCTTTGGTCTCCATCTCTATCTCAAATGTTACCTGCAGAGGTGAAAGCTGCCATGCTGATTACTGATGCTGAGAAATAT AGTCTTCTTGGCGAAGGAAACCCAAAATTGTCAAAGAACATTCTGACTTCTACATATAGTTCTCAAACTAACAATAGCAAGGAAGGACATGCAGAGATAA ATGAGGCTGATACAAGAAATTGGTTAAAAGGAATCAGAGACAGTGGTTACAATGTATTGGGCCTGGCCACCACCATCGGAGATCCATTTTTCAAATGCTT AGATGCAAATTCAGTTGCGTTGGCACTAATGGAGAACGTACAGTCATTCGACTTCAGACATCTGAGACTGCTTATTCATTCAGTCTTGGTCCATTTGATT AAATTTTGTCCCCAAGAACTGTGGGAGGTCTGGCTGGAGAAGATTTTGCACCCGTTGTTTGTCCACATACATCAGATTCTTAGCTTCTCATGGTCCAGTC TTTTGCATGAAGGAAGGGCAAAGGCTCCTGATGTACAAGGAATCGTTGCTGGGTCGGACCTAAAAGTGGAAGTAATGGAAGAGAAACTGCTCCGAGATTT AACCCGTGAGATGTGCACATTTCTATCGGTCATGGCGTCACCTGGGCTAAACACTAGGCTCCCAACTCTAGAACAATCTGGGCATATTAACCGTGTGGAT ACATCTTCTCTAAAAGACTTGGAAGCCTTTCTCTCCAACTCTATGGTTGCTTTCATTTTGATGCACAGTAGCTTGGCGCTTCCAGCATTGCAGATGTGTT TAGAAGCTTTCACATGGACTGATGGTGAATCTATGACGAAAGTTTCTTCTTTTTGTTCTGCTGTCGTTGTTCTAGCCATCTCAACAAGAAATCTTGAGCT CCAACAGTTTGTCTGTAAGGATCTTTTCTCTGCAGCGATCAAAGGTTTGGCACTTGAGTCAAATGCCATAATCAGTGCAGATTTGGTCAGTCTGTGTCGT GAAATATTCATCCATCTTTGTGACAGAGACCCTGCTCCTAGGCAGGCAAGTGATCATGCCTTGGTTTTAGATAACGGGGTTCTACTCTCTCTTCCTTGCA TTTCGCCCCATGATTTGGCTGCTTTTTTGGAAGCTTTGACAAAGACATCTAGTCCAAAGGAACAAAAGCAGCACATGAGGAGCTTGCTTATGTTAGCTAC TGGAAACAAGTTGAAGGCCCTTGCTGCCCAGAAAAGTGTAAATATCATCACAAACGTTACAGCAAGGCATCGCAGCTCAGCAACTGCCGCCTCGGAAACT AGAATCGAGGATGGGGAACCCGTGGGTCTGGCAGCTATCATGTGA
AA sequence Show only first row Show all	>Lus10033845 pacid=23172812 polypeptide=Lus10033845 locus=Lus10033845.g ID=Lus10033845.BGIv1.0 annot-version=v1.0 MEEANSCLGVANNVALAIVAALDWNSTPDARKAAVSYLDSVKTGDVRVLASTSLLLVKRDWSSEIRLQAYKMLQHLVRLRWEELSPIERRDFANVAVELM SEMTKPSEEWPLKSQKAALVAEIVRREGIELWQELLPSLISLSNQGPVQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEIFPLLYTLLER HFGAALSEASRQQLDVAKEHAATVTATLNAINAYADWAPLPDLAKFGIIHGCGFLLSAVDFRLHACEFFKLVSSRKRTIDASVSEFDSAISSIFQILMNV SRDFLYKSSSTAAAVDENEIEFVEYICESMVALGSTNLQCISGNSSILSIYLQQMLGFFQHYKLGLHYESLLFWLALMRDLVSKSKVTSASGDGSDSAQL DNEKQMILNLVDDNICRSILDISSQRMLRKEKAFPGASFALGTLELWSDDVEGKGDFGQYRSKLLELMRLMASFKLIIASSKISDKIISVINIPLTSPVP VQDLAVMESLQVSLENIVTVVFDGSNEFAGGSSELHLAVCRIFEGLLQRLLSLKWMEPTLVEILGHYLDALGPFLKYSPDAVGGVINKLFELLTSLPLVI ENPSTTDARRARLQICMSFIRIAKAADKSILPHMKGIADTMGHMQREGCLLRSEHNLLGEAFLVMASAAGLQQQHEVLNWLLEPLSQQWIQLDWQNKYLS EPLGVVRLFLDTPLMWSIFHTVAFFEKALKRSGFKKSNLYTQNSSSTNPPMHPLSPHLAWMLPPLLKLLRALHALWSPSLSQMLPAEVKAAMLITDAEKY SLLGEGNPKLSKNILTSTYSSQTNNSKEGHAEINEADTRNWLKGIRDSGYNVLGLATTIGDPFFKCLDANSVALALMENVQSFDFRHLRLLIHSVLVHLI KFCPQELWEVWLEKILHPLFVHIHQILSFSWSSLLHEGRAKAPDVQGIVAGSDLKVEVMEEKLLRDLTREMCTFLSVMASPGLNTRLPTLEQSGHINRVD TSSLKDLEAFLSNSMVAFILMHSSLALPALQMCLEAFTWTDGESMTKVSSFCSAVVVLAISTRNLELQQFVCKDLFSAAIKGLALESNAIISADLVSLCR EIFIHLCDRDPAPRQASDHALVLDNGVLLSLPCISPHDLAAFLEALTKTSSPKEQKQHMRSLLMLATGNKLKALAAQKSVNIITNVTARHRSSATAASET RIEDGEPVGLAAIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	1.7	0.9381
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	2.2	0.9343
AT3G50380			Protein of unknown function (D...		Lus10022476 [exp]	2.2	0.9411
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	2.4	0.9329
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	3.5	0.9371
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	5.3	0.8980
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	5.4	0.8977
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10037748 [exp]	6.6	0.9404
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	7.7	0.9039
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	8.3	0.8993

Compare expression of checked genes

Lus10033845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.