Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018997 [exp] 573 / 0 ND / Lus10018970 [exp] 224 / 3e-74 ND / Lus10018971 [exp] 46 / 8e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032900 [exp] 189 / 2e-58 ND / Potri.005G047000 [exp] 137 / 7e-39 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033847 pacid=23172803 polypeptide=Lus10033847 locus=Lus10033847.g ID=Lus10033847.BGIv1.0 annot-version=v1.0 ATGGCTGCCTATGGAAATACTTACAAAGGATACACCACCTACAGCACACCGCAAGCCAACGGCTGGAGCGAACCAAGTAGCTATTCTTCTGATCACGTTT GCAAGCCAGTGATCATTGATGCTCAAGGGAGGAAGAGGCCCATCATTGCTCTCACGCCTACCAACGAACCCTATCGATCTTCTGAGGCCTCGCATCATCA TCAGCACAATGTTCATTCGCCTTACCCCTCTGAGAACAAGCATGGCCATTCCATGGAGCCTGCAATGGTGGAGCACTACAGAGTCGAGCAAAAACTGCAT CAGACTTCAGACCCTATTTACAATCGCTTGCAGAAAGTAGGGGAGATCATCACAACAGTGCAGCAAGAGGTTAGCACTCCCAAGTTCGGACCTTCGAATG CTGCTCAGTCGCACCACTCCCCTAAACATACAGGCTTCATTGACAGTCATCATGGGGACAAAGAGTGGCAAAGGTCAAATGGCCACGCCCACCAGAACGA CAACAGGTATGAGGATTATTACCGGAAGCCAGCAATCTCATCGGAGCCAACAATGTTCACCACCAATGGTGGATGGGCTAGGCCAACTCAGACAACTTGG GCGTCACAACCAGATTCAAATATTTATGGTGCAACAAATAATATCAGCACAGCCATAGGATACCTGAAAGAAGCTGTCAAACCTTCTGTCACTAATCACC AACCTTACAGTTACAGACACGCTGAGCCACCTTACTCAGAAACCCATCATGGCAAGATGGAGTCGACCTACCCCTCTGGCCATTATGCCACGACTGGTCC AAGGTATAATGAGGCAGGATACAATAAAACTATTGACAGCAATGGAGGCGCAAGAAGGTATGGAAATTTCAAATTCTCACCCAGGACATTTGCGTGA
AA sequence Show only first row Show all	>Lus10033847 pacid=23172803 polypeptide=Lus10033847 locus=Lus10033847.g ID=Lus10033847.BGIv1.0 annot-version=v1.0 MAAYGNTYKGYTTYSTPQANGWSEPSSYSSDHVCKPVIIDAQGRKRPIIALTPTNEPYRSSEASHHHQHNVHSPYPSENKHGHSMEPAMVEHYRVEQKLH QTSDPIYNRLQKVGEIITTVQQEVSTPKFGPSNAAQSHHSPKHTGFIDSHHGDKEWQRSNGHAHQNDNRYEDYYRKPAISSEPTMFTTNGGWARPTQTTW ASQPDSNIYGATNNISTAIGYLKEAVKPSVTNHQPYSYRHAEPPYSETHHGKMESTYPSGHYATTGPRYNEAGYNKTIDSNGGARRYGNFKFSPRTFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033847 [exp]	0	1
					Lus10018997 [exp]	1.0	0.9893
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	1.4	0.9762
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	2.8	0.9634
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	3.0	0.9670
AT1G52400		ATBG1, BGLU18, ...	BETA-GLUCOSIDASE HOMOLOG 1, A....		Lus10030575 [exp]	3.9	0.9531
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10009884 [exp]	5.1	0.9146
AT3G16330			unknown protein		Lus10038274 [exp]	5.3	0.9509
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	5.5	0.9523
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Lus10014957 [exp]	7.1	0.9394
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	8.0	0.9421

Compare expression of checked genes

Lus10033847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.