Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54570 747 / 0 Esterase/lipase/thioesterase family protein (.1) AT5G41130 552 / 0 Esterase/lipase/thioesterase family protein (.1.2) AT5G41120 544 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G02030 513 / 7e-174 transferases, transferring acyl groups other than amino-acyl groups;acyltransferases (.1) AT3G26840 397 / 2e-128 Esterase/lipase/thioesterase family protein (.1) AT3G26820 332 / 3e-104 Esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018998 [exp] 1278 / 0 AT1G54570 824 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10012560 [exp] 566 / 0 AT5G41120 663 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10041529 [exp] 557 / 0 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Lus10039135 [exp] 45 / 0.0002 AT3G51520 421 / 2e-148 diacylglycerol acyltransferase family (.1) Lus10013796 [exp] 44 / 0.0005 AT3G51520 424 / 2e-149 diacylglycerol acyltransferase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G033000 [exp] 879 / 0 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046700 [exp] 875 / 0 AT1G54570 868 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033300 [exp] 852 / 0 AT1G54570 850 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.005G046600 [exp] 832 / 0 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033600 [exp] 829 / 0 AT1G54570 830 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033101 [exp] 788 / 0 AT1G54570 796 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324400 [exp] 637 / 0 AT5G41130 745 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.001G324200 [exp] 605 / 0 AT5G41120 734 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.017G062200 [exp] 600 / 0 AT3G26840 644 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G323800 [exp] 595 / 0 AT5G41130 686 / 0.0 Esterase/lipase/thioesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF03982 [flax] [poplar] DAGAT Diacylglycerol acyltransferase CL0028 [flax] [poplar] AB_hydrolase PF08840 [flax] [poplar] BAAT_C BAAT / Acyl-CoA thioester hydrolase C terminal
Representative CDS sequence Show only first row Show all	>Lus10033848 pacid=23172836 polypeptide=Lus10033848 locus=Lus10033848.g ID=Lus10033848.BGIv1.0 annot-version=v1.0 ATGACTTCATTGGTTGCCTTCCCTGTATCTCTTCCTCTATTGACATTTTCAGAGGGGAAGCCTCGGCTTCATGTGAAGGTTCGTTGCTCAGATAGTGGCG CATCATCAACAGCATTTTCATCTGATTCGCTTGTCCTAAATGGAAGAAGCAAAGATGAAGTGGATGTGCTGTTTAATGGAGGTGTTGGACAGAAAGAGAA GAGCATGGAGCCTTTGACCGATGGAGGAAATGGGAGACCAAGCTCTAGCAAGAGAGGGAGAGATCTTATTACCAAGGACATGGATGTGTTGTGGGATGAT GGATATGGCACTAAGACTATTAAAGACTATCTTATTGAAGCGGAAGATATGATTAAGCCGGATGGTGGGCCACCCCGTTGGTTTTGTCCTGTTGAGTGTG GACAACCTCTCAGAGATTCTCCCGTTCTTCTGTTTCTGCCTGGGACTGACGGCGTTGGATTGGGACTTGTGTTGCATCATAAAGCTCTTGGGAAGGTGTT TGAAGTTAGGTGCCTCCATATTCCAGTTGAAGACCGAACTCCATTCCAAGGCTTGGTAAACTTTGTGGAAGAAACTCTAAAGATTGAGCATGCGTCATCT CCAAATAGACCGATTTACCTAGTAGGGGATTCATTTGGAGGATGTTTAGCACTTGCTGTCGCTGCCCGGAATCCTCAAATAGACCTTGTTGTTATATTAG CCAATCCAGGCGAGTCAGTTTACAACCAATTTCTAATATTTTCAGTCCCTTTTCTTATTAACATATATATATATATATTTTTTTTATTTCTTAATTGTAA TCCACTGAAAATGGCAATGGTCAATGTGCAAGATAAGCTTCCTCCAAGGGCTCAAATCGAACAGTTGTCAGGAAATCTTACATCTTTACTCGGTTATCTT TCTGGTTTAAGTGACATTATCCCAAAGGAAACTCTTGCTTGGAAGTTGAAACTGATACAGTCAGGTGCAGCTTATGCTAATTCACGCCTGCATGCTGTAA AAGCTGAAGTGCTACTACTTGCTAGTGGCCAAGATAACTTGCTTCCCAGTAAAGACGAAGCTGTACGTCTTAAAAAAGTGTTGCAGAATTGTACAGTTCG TTACTTCAAGGACAATGGCCATACCATTTTAATGGAAGAGGGCCTCAGCTTGCTTACTATCATTAAGGGTACCTGCAAGTATCGCCATTCCAGGAAGATT GATCTTGTCACGGACTTTGTACCACCTAGCAAATCGGAATTTGAACGAGTATTTTTCAAAGACGGAAGGATATTTCAGGTAGCTGCTGAACCTGTGATGC TCTCTACTCTTGAAGATGGAAGTATTGTGAAAGGTCTCTCTGGGGTTCCAACAGAAGGACCTGTGCTATTAGTTGGGTACCATATGCTGATGGGTCTTGA ACTGAATTCCCTTGTTGGGGAGTACTTGAGACTAAAGAAAATCCTCCTACGTGGGATAGCTCATCCAGAACTATTTCTTGGGAGAATGGAGTCCTCCTCT ACTGAATTTAATTTCCTGGACTGGATTAAAGTAATGGGTGGAGTGCCTGTATCAGCTACCAATTTTTACAAATTGCTGTCAACAAAATCACATGTGCTGC TTTATCCCGGAGGTGCCCGCGAGGCTCTACATTACAAGGGTGAAGCACACAAGTTAATTTGGCCTGAACAGCAGGAATTTGTGAGAATGGCTGCAAAGTT TGGAGCCACTATTGTACCATTCGGAGGCGTGGGCGAAGATGATTTAGTAGAGTTGGTGCTTGATTACAAAGACATGATGAATATCCCTATCCTTAATGAC TACATTAGAGAGCAAGCTCGTGGTGCTCCTAGATTAAGAGATGAGGTGAAGGGGGAGGTTGCCAACCAAGAACTGTTTATTCCAGGGCTGTTACCGAAGG TCCCTGGCCGCATCTACTTCCTGTTTGGGAAGCCTATAGTGACTAAAGGAAGAGAAGACATCTTGAGAAACAAAGAAGATGCAAACCAGCTCTACTTGCA GATAAAATCGGATGTTGAAGAGAATATAGCCTACCTGTTGAAGAATAGAGAGAAGGATCCTTATCGTAGTGTCATTGACAGAATCGTCCATCGCGCACTA AATCCTTCATCTCCAGAAGTTCCCGCATTCAATCTCGAACAAGTCCATGACAGTTAA
AA sequence Show only first row Show all	>Lus10033848 pacid=23172836 polypeptide=Lus10033848 locus=Lus10033848.g ID=Lus10033848.BGIv1.0 annot-version=v1.0 MTSLVAFPVSLPLLTFSEGKPRLHVKVRCSDSGASSTAFSSDSLVLNGRSKDEVDVLFNGGVGQKEKSMEPLTDGGNGRPSSSKRGRDLITKDMDVLWDD GYGTKTIKDYLIEAEDMIKPDGGPPRWFCPVECGQPLRDSPVLLFLPGTDGVGLGLVLHHKALGKVFEVRCLHIPVEDRTPFQGLVNFVEETLKIEHASS PNRPIYLVGDSFGGCLALAVAARNPQIDLVVILANPGESVYNQFLIFSVPFLINIYIYIFFLFLNCNPLKMAMVNVQDKLPPRAQIEQLSGNLTSLLGYL SGLSDIIPKETLAWKLKLIQSGAAYANSRLHAVKAEVLLLASGQDNLLPSKDEAVRLKKVLQNCTVRYFKDNGHTILMEEGLSLLTIIKGTCKYRHSRKI DLVTDFVPPSKSEFERVFFKDGRIFQVAAEPVMLSTLEDGSIVKGLSGVPTEGPVLLVGYHMLMGLELNSLVGEYLRLKKILLRGIAHPELFLGRMESSS TEFNFLDWIKVMGGVPVSATNFYKLLSTKSHVLLYPGGAREALHYKGEAHKLIWPEQQEFVRMAAKFGATIVPFGGVGEDDLVELVLDYKDMMNIPILND YIREQARGAPRLRDEVKGEVANQELFIPGLLPKVPGRIYFLFGKPIVTKGREDILRNKEDANQLYLQIKSDVEENIAYLLKNREKDPYRSVIDRIVHRAL NPSSPEVPAFNLEQVHDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	0	1
AT5G10310			unknown protein		Lus10025740 [exp]	3.0	0.8054
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10006169 [exp]	4.5	0.7815
AT3G55240			Plant protein 1589 of unknown ...		Lus10003293 [exp]	6.5	0.7969
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	8.7	0.7864
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040716 [exp]	11.6	0.7685
AT3G06880			Transducin/WD40 repeat-like su...		Lus10036201 [exp]	12.4	0.7868
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	16.6	0.7413
AT4G13150			unknown protein		Lus10038173 [exp]	18.5	0.7727
AT1G12330			unknown protein		Lus10028918 [exp]	22.4	0.7616
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	26.3	0.7561

Compare expression of checked genes

Lus10033848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.