Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27950 629 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55550 365 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 265 / 6e-77 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27550 254 / 9e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 259 / 1e-74 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G65930 256 / 3e-73 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT4G27180 235 / 6e-68 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G54670 234 / 2e-67 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT4G21270 231 / 4e-66 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 228 / 5e-65 ATK5 kinesin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018999 [exp] 1082 / 0 AT5G27950 617 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035954 [exp] 265 / 4e-77 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 251 / 2e-72 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029914 [exp] 247 / 6e-72 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005582 [exp] 243 / 4e-69 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 239 / 4e-69 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018384 [exp] 239 / 4e-69 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10013714 [exp] 243 / 6e-69 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10007629 [exp] 238 / 2e-68 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G033900 [exp] 781 / 0 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G223800 [exp] 367 / 2e-115 AT1G55550 647 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G000800 [exp] 360 / 4e-113 AT1G55550 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 267 / 1e-79 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G110600 [exp] 266 / 1e-77 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 254 / 1e-74 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 258 / 4e-74 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 250 / 2e-71 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G455300 [exp] 248 / 9e-71 AT5G65930 1881 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.011G146700 [exp] 246 / 5e-70 AT5G65930 1864 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10033849 pacid=23172744 polypeptide=Lus10033849 locus=Lus10033849.g ID=Lus10033849.BGIv1.0 annot-version=v1.0 ATGAAGTCGGATCATGAGATTGAATTGAAAGCAACTGTTTACACTGATGTCAACGTTATTCCTGAGCATGAAAGCAACGACCTTGACATGTCAATATTGA ATCTTGAAGGAGAAATTGCAGAGCTGAGACAGAAAGTAGAGTCATTTGACAAGAAGAGGAGGGAGGCCTTGAAGAGGATATTGGACATTAAAGGCAGCAT CAGAGTGTTCTGTCGAGTACGGCCTTTCTTACTAACAGAAAGGAGAAGGATTCATGAACCCATTTCCGTTGACTTGCACAAGGTCGTGGTTAAATCTGTT GGAAGCAAGAAAGAGTTCAGATTTGATAAAGTTTTCCACCAGTCTGCTAACCAAGATGATGTGTTTCTGGAGGTTGAGCCAGTGCTTAAATCAGCACTTG ATGGACACAATGCATGCATATTGGCATATGGCCAAACTGGGACTGGCAAAACATTTACCATGGATGGTCTTAATCATCAACCGGGAATCATCCCACGAGC TCTAGAAGTTCTTTTTCGCGAGGCCTCATTCGATAAGTCATCATCTGTAACATTTTCCATGAGCATGCTGGAGGTCTACATGGGTAGCCTGAAGGACTTG CTTGCTCCGAAAGCATCAGCTCGATGCAATCTCAACATTCAGACAGATCCAAAAGGAATGGTGGACATTGAAGGTCTAACAGAGGTTCCACTTCCAAACA TTGCAAAAGCTAAATGGTGGTACTCCAAGGGAAGGAGGTGTAGGTCAACTTCATGCACTAATGTGAATGAGACATCAAGCAGGTCACATTGCTTAATGAA GATTACGATATCTAGAGATGGCGAAATCAAGCAAGGTATACGAGAAGTGAGCAAATTATGGATGGTTGATCTTGGAGGTAGTGAAAGGTTGTTAAAGACA GGAGCCACTGGGCTGACCCTTGATGAAGGAAGAGCCATCAATCTCTCTCTTTCTGCACTTGGTGATGTTATTGCTGCTCTCAGAAGGAAAAGAGGCCATG TGCCTTACAGGCATGTTCTTAGTTACTATTCACATTTTTCTATTTGCAGAAATAGCAAACTAACTCAGATACTGAAAGATTCCTTAGGTCATAGTTCAAA GGTTCTGATGCTGGTGCATATAAGCCCATGTGAAGAAGATGTTGGAGAGACAATATGCTCTTTGAGCTTTTCAAGTAGAGCAAGAGGAATTGAGACTGAT AGAGAAGTTGCAGAGGATGTAAGGAAGCAAAGAGATAAAAGGATAGTGGAACTTGAAGATGAGATGAAAGAAGCAGAGGAAGAATGCCAGAAGCTAAGGA ATCAAATAAGGAAGGCGGAGTTCCTCGTTCATGAATACATGAAGCCATTGTCAAGCACTTGCCAACTTTCTGAAGACAAAGAAAACATAGCATCATCAGC AGCTCCTGCACAGAACAAGAAAGAAAACAACAACTCAATGACAAAAGCTGCTGAAAGAGGAGTGAAGAGAAGCATTGTTACTTCACTTCCAAGATTCATG ACTTCTACTGCCGCGAGTCGCCACAGGCAAAGTGCTGCAGAAAGAGAAGTTGTAGGGAGGGCAAGAAGTTTGCGATCAGAGGCAACAAGAAGCTCCGTGC AGTTATCGTGTTCCCAGTCACTCAGTTACTCGGAAATCCGTCTCAAATCCATATTACGAGATTCGAATAAGAAATCAAGGTATGGTGAAATAAAAACTGC TCCCCTCTCAGAAAGTCCCAAAGCCAAATGCAACAGTTCTGACTCCAAGGTTGCTTCCACCCCAAGAAGCAAGTTTGTAACTTCATCAGTTCCAAACTTT AGAACTACAGTAGCTAATCACAGAAGAAGAATGTCTAATCTGACCTAA
AA sequence Show only first row Show all	>Lus10033849 pacid=23172744 polypeptide=Lus10033849 locus=Lus10033849.g ID=Lus10033849.BGIv1.0 annot-version=v1.0 MKSDHEIELKATVYTDVNVIPEHESNDLDMSILNLEGEIAELRQKVESFDKKRREALKRILDIKGSIRVFCRVRPFLLTERRRIHEPISVDLHKVVVKSV GSKKEFRFDKVFHQSANQDDVFLEVEPVLKSALDGHNACILAYGQTGTGKTFTMDGLNHQPGIIPRALEVLFREASFDKSSSVTFSMSMLEVYMGSLKDL LAPKASARCNLNIQTDPKGMVDIEGLTEVPLPNIAKAKWWYSKGRRCRSTSCTNVNETSSRSHCLMKITISRDGEIKQGIREVSKLWMVDLGGSERLLKT GATGLTLDEGRAINLSLSALGDVIAALRRKRGHVPYRHVLSYYSHFSICRNSKLTQILKDSLGHSSKVLMLVHISPCEEDVGETICSLSFSSRARGIETD REVAEDVRKQRDKRIVELEDEMKEAEEECQKLRNQIRKAEFLVHEYMKPLSSTCQLSEDKENIASSAAPAQNKKENNNSMTKAAERGVKRSIVTSLPRFM TSTAASRHRQSAAEREVVGRARSLRSEATRSSVQLSCSQSLSYSEIRLKSILRDSNKKSRYGEIKTAPLSESPKAKCNSSDSKVASTPRSKFVTSSVPNF RTTVANHRRRMSNLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27950			P-loop containing nucleoside t...		Lus10033849 [exp]	0	1
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	6.3	0.9179
AT5G27950			P-loop containing nucleoside t...		Lus10018999 [exp]	8.0	0.8690
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	8.7	0.9073
AT4G20930			6-phosphogluconate dehydrogena...		Lus10023258 [exp]	18.3	0.9092
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	26.2	0.9067
AT2G23770			protein kinase family protein ...		Lus10016794 [exp]	27.9	0.8986
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	31.2	0.9038
AT1G12390			Cornichon family protein (.1)		Lus10000384 [exp]	31.6	0.8369
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	33.7	0.9028
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	35.5	0.8909

Compare expression of checked genes

Lus10033849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.