Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05100 443 / 4e-157 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019000 [exp] 612 / 0 AT3G05100 462 / 1e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001712 [exp] 514 / 0 AT3G05100 474 / 2e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004147 [exp] 509 / 0 AT3G05100 471 / 6e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046300 [exp] 486 / 5e-174 AT3G05100 484 / 2e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G034000 [exp] 481 / 3e-172 AT3G05100 481 / 5e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033850 pacid=23172767 polypeptide=Lus10033850 locus=Lus10033850.g ID=Lus10033850.BGIv1.0 annot-version=v1.0 ATGGCGTTCCTCTCTTCTCCGCCACCGCAGAAAGGCATTGTCGTCACCGTTCCATTTCTCGTCCTCGCCGCCTCCTTTATCGCTCTCACTCTCTTCTTCC TCGCCACTTCCATCTCCCCTCCTTGTTCCTGCACCCTTCCTCCTCCGGCGCCCTTCCCATCATCATCATCATCATCATCCTCCGCCGACAGGTCGGTAGT GGAGAGGGTGTCGGCGACAGCAGATGATGTTAACTGGGTGAAGGATCAGATCGTAAGGAATGGTTTGCGTATGCAGGACAATGTTCTGCGCAAAGGGATT AATCCTCGCACTAGGGCTCACCAACTCCAAGATCTCATCCAGTACAAGGGCATCTCACACTACGAAGGAGTCAACTCGGACAACCACACGGCTCTCCCCT GTCCTGCCGAACTCCTGGTGGAAGAACACCATAGCAATTATGGAGAGCCGTGGGCAGGCGGGAGGGATGTTTTCGAATTCCTTGCTGAGGCCTCTAACCT GTCACCAAACTCCCAAGTTCTTGAGATTGGCTGTGGCACCTTGCGCGTAGGCCTGCATTTCATCCGTTACCTTAGTTCGGGGTGCTTCCATTGTCTCGAG AGGGATGAGCTTTCCCTGATGGCCGCATTAAGATACGAGCTTCCATCTCAGGGTCTTCTTCACAAGCGGCCAGTGATAGTCCGTGGAGAAGACATGGATT TTACTAGGTTTGGACCTGGTGTTTCGTACGATTTGATATATGCTAGCGCTGTGTTTCTCCACATGCCAGATAGACTTGTCTGGAAAGGACTTGGAAGGTT AGCAAGTAAGTTGAATCCTGACACGGGGAGAATATTTGTGTCGCACAATATAAAGTTCTGTACCAGATTGGGAGGTGAAGAATGTACCAAGAAGCTGAGT GATATGAGACTTGAATATATTGGCAAGCATACACACGACAGCTTGCTTTTCAATCACTATGAGATCTGGTTCGAGTTCAGACGGTCCAAAAATCAGGGAA GACGCTGA
AA sequence Show only first row Show all	>Lus10033850 pacid=23172767 polypeptide=Lus10033850 locus=Lus10033850.g ID=Lus10033850.BGIv1.0 annot-version=v1.0 MAFLSSPPPQKGIVVTVPFLVLAASFIALTLFFLATSISPPCSCTLPPPAPFPSSSSSSSSADRSVVERVSATADDVNWVKDQIVRNGLRMQDNVLRKGI NPRTRAHQLQDLIQYKGISHYEGVNSDNHTALPCPAELLVEEHHSNYGEPWAGGRDVFEFLAEASNLSPNSQVLEIGCGTLRVGLHFIRYLSSGCFHCLE RDELSLMAALRYELPSQGLLHKRPVIVRGEDMDFTRFGPGVSYDLIYASAVFLHMPDRLVWKGLGRLASKLNPDTGRIFVSHNIKFCTRLGGEECTKKLS DMRLEYIGKHTHDSLLFNHYEIWFEFRRSKNQGRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10033850 [exp]	0	1
AT3G57400			unknown protein		Lus10018074 [exp]	1.0	0.8557
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10025890 [exp]	4.0	0.8032
AT3G57400			unknown protein		Lus10042066 [exp]	4.6	0.8191
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	5.5	0.8397
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	9.5	0.8042
AT2G42310			unknown protein		Lus10026317 [exp]	9.8	0.8051
AT5G67490			unknown protein		Lus10019019 [exp]	10.2	0.7712
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	10.6	0.8108
AT1G13380			Protein of unknown function (D...		Lus10041447 [exp]	15.5	0.7680
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	15.6	0.7741

Compare expression of checked genes

Lus10033850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.