Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61820 294 / 2e-94 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015933 [exp] 601 / 0 AT5G61820 306 / 7e-100 unknown protein Lus10004249 [exp] 324 / 1e-106 AT5G61820 435 / 2e-150 unknown protein Lus10042158 [exp] 308 / 1e-100 AT5G61820 415 / 1e-142 unknown protein Lus10017316 [exp] 305 / 3e-99 AT5G61820 436 / 1e-150 unknown protein Lus10003210 [exp] 301 / 1e-97 AT5G61820 431 / 1e-148 unknown protein Lus10017315 [exp] 105 / 1e-26 AT5G61820 130 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G108500 [exp] 381 / 2e-128 AT5G61820 470 / 2e-163 unknown protein Potri.015G108600 [exp] 358 / 9e-120 AT5G61820 477 / 3e-166 unknown protein Potri.015G108800 [exp] 356 / 1e-118 AT5G61820 468 / 7e-163 unknown protein Potri.015G108700 [exp] 351 / 8e-117 AT5G61820 453 / 5e-157 unknown protein Potri.012G110300 [exp] 285 / 9e-93 AT5G61820 366 / 9e-125 unknown protein Potri.012G110600 [exp] 115 / 9e-30 AT5G61820 153 / 4e-44 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07712 [flax] [poplar] SURNod19 Stress up-regulated Nod 19
Representative CDS sequence Show only first row Show all	>Lus10033851 pacid=23172855 polypeptide=Lus10033851 locus=Lus10033851.g ID=Lus10033851.BGIv1.0 annot-version=v1.0 ATGGCCTCCACACCCACACTTCCGGTAGCATTGACGGTGGGGGGCGTGACGGCGGGGCTCGTCATACTAGTATTGTCGGCTCTTCCATCCGCAGCACTCC AGTTGAAGTCGGAAGTTTTCTACTCCCCAACATTTGAAATGGCTCCCGGAGAGGTAACCTTCAAGTACTTCTACGGCGTGGACTTCCCAAAGGGACACCT GGCTCTGAAGCAATTCCGCGTCGACGTGGTGGACGCAGAGGACGACCACGTCATCCCTTACCACGAAGTGTACCTCCACCACTCCTCCATGTCACGCTAC TACCAGGCTACAAACTATTCCATCCCTCCGTTATTGGAGCAGGACACCTTCCCTTACGGAGACGGATTCATCTCCCTGCGCAACCACGGCCTCTGCCAGG GCGACATCCTCGGCCAGTACGTCGGTATAGGGACGGAGACTCTTAGCACCACAACCAACGTCCCTGATCCCTACGGGATGGAGATCGGTAACCCGGACCT CATCCCCGATGGATTTCAGGAGAAGTGGTTGCTGGCGGTCCACACCATCGATACGCGTGGCACGGTCGACAGGTTTGGGTGCACGGAGTGCAGGAGGGAT CTGTACAATGTGTCGGTAGATCCCTTGGGGGAGCCGTTGAAACCCAATTACCACGGTGGACTTTCCTGTTGCTATGCTCACACCAAATGCAAAGTTAGAG ATGACTACCATGGCCCCACTAGGAGAATAAGGATGCGTTACACGTTGACTTGGACGGACTGGATTCCGTCCATTGTTCCCGTTAGAGTTTACATCCTTGA TGTCACGGATGAGATGAAGCTCCACGTTGATCCGTCTAACGGAGCCGTTACCGCACACCACGACTGCAAGGTTGAGTATGACGTGGAGAGATGCAACATT GGAGAAGAGAAAGTGAGTGAGGAGGAGTGTGTGGATTTCAAGAGATCAATAGTGGCGATTCCAAAGGGTGGGAACCTAATACTTGGTGTCACCCACTTGC ATCCCGGAGCCATTAATTCCACCTTATACGGACAGGACGGACGGGTGTTGTGTAGAACGGAACCGATTTACGGAGAAGGAGAAGAAGAAGGGTACGTGGT TGGGATGTCAACGTGTTACCCTGAGCCGGGATTCGTAGTTATTAATGACGGGGAACTAGTAGTTCACGAATCCGTCTACAACGCCACCCGCCGACGCACC GGAGTTATGGCCCTCTTTCACCTACTTATCGCCGATCCACAACCTGAGAACACAGCCTCGTCATCTTTCCCGCGCCTTACTTTTCTGATGTCGGATAAGT TGAGCGTCAGAGGAATTACGTTCCCTGAAGGTGGAGTGCTGACCGGGGCTTTGCTGGGAGTCGGAGGAATTATTATTTTGGCTGCAGTGGTCGTCGTTGT TGTTCAACTGGGAAAAAATTACTTACGTACCGATATGATTATATGA
AA sequence Show only first row Show all	>Lus10033851 pacid=23172855 polypeptide=Lus10033851 locus=Lus10033851.g ID=Lus10033851.BGIv1.0 annot-version=v1.0 MASTPTLPVALTVGGVTAGLVILVLSALPSAALQLKSEVFYSPTFEMAPGEVTFKYFYGVDFPKGHLALKQFRVDVVDAEDDHVIPYHEVYLHHSSMSRY YQATNYSIPPLLEQDTFPYGDGFISLRNHGLCQGDILGQYVGIGTETLSTTTNVPDPYGMEIGNPDLIPDGFQEKWLLAVHTIDTRGTVDRFGCTECRRD LYNVSVDPLGEPLKPNYHGGLSCCYAHTKCKVRDDYHGPTRRIRMRYTLTWTDWIPSIVPVRVYILDVTDEMKLHVDPSNGAVTAHHDCKVEYDVERCNI GEEKVSEEECVDFKRSIVAIPKGGNLILGVTHLHPGAINSTLYGQDGRVLCRTEPIYGEGEEEGYVVGMSTCYPEPGFVVINDGELVVHESVYNATRRRT GVMALFHLLIADPQPENTASSSFPRLTFLMSDKLSVRGITFPEGGVLTGALLGVGGIIILAAVVVVVVQLGKNYLRTDMII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61820			unknown protein		Lus10033851 [exp]	0	1
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	2.2	0.9158
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10028015 [exp]	3.5	0.9143
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003944 [exp]	7.4	0.8839
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	7.9	0.8729
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	9.8	0.8857
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	11.2	0.9040
					Lus10011351 [exp]	11.3	0.8158
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	11.4	0.8669
AT1G60783			unknown protein		Lus10026693 [exp]	12.2	0.8826
AT1G64700			unknown protein		Lus10001663 [exp]	17.9	0.8300

Compare expression of checked genes

Lus10033851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.