Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63450 416 / 5e-141 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G48520 397 / 1e-133 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT3G56630 362 / 4e-120 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 362 / 5e-120 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G01900 345 / 1e-113 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT2G27690 345 / 1e-113 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT1G24540 314 / 4e-101 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G63710 313 / 8e-101 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G23190 314 / 1e-100 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT2G45970 312 / 4e-100 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 575 / 0 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 570 / 0 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 556 / 0 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 352 / 6e-116 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10036024 [exp] 345 / 4e-113 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10012531 [exp] 345 / 6e-113 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10040687 [exp] 322 / 3e-104 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 321 / 6e-104 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10032278 [exp] 305 / 5e-97 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042100 [exp] 593 / 0 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 583 / 0 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.005G220700 [exp] 581 / 0 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220900 [exp] 580 / 0 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.012G096800 [exp] 381 / 2e-127 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031700 [exp] 358 / 2e-118 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.001G331100 [exp] 343 / 2e-112 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Potri.006G033600 [exp] 342 / 4e-112 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.009G145400 [exp] 341 / 6e-112 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.004G185300 [exp] 335 / 9e-110 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10033852 pacid=23172823 polypeptide=Lus10033852 locus=Lus10033852.g ID=Lus10033852.BGIv1.0 annot-version=v1.0 ATGGTGACTGAACTACTCGCCGTATTCTTCCTCATCCTCTCTTACTACTGCATCTTTTCATCATCCAGGAAGAACAAACCCAAGTCCCAAAACCCCCACT ACCCCAAATCCTATCCTTTTATCGGCTCCGCGCTCGACATCGCCGCCAACAAGGAGCGGCGCGTGCAGTGGACTTCCGACATTCTCCGCCGCACCCCCAC CGCCACCTTCACTCTCGACCTCGCCTTCGGCTCCCGCCGCATCTTCACCGCCAACACTGCCAACGTCCAGCACATCCTGAAATCCCACTTCCTCAACTAC CAGAAGGGATTCGAGTTCCGCTCCGCACTCTTCGACCTCCTCGGCGACGGCATCTTCAACGCCGACGGTGACACGTGGAAGCTCCAGCGCCAGCTCTCCA GCCACGAGTTCAACACCAGATCCCTCCGCAAGTTCGTCGAGACCGTCGTCGACTCCGAGCTCACAAATCGCCTCATCCCGACTATCTCCGCTGCCGCTGC CACTGGATCGGTGCTCGATTTGCAGGACATCCTCCAGCGATTCGCGTTCGATAATATCTGCGTGATTGCGTTCGGGTACGACCCGGTTTACTTGGCTCCA TCGCTTCCGGAGGCCAGATTCGCAGTCGCGTTCGAGGATGCGGTGAGGATTAGCAGCGAGCGGCTCAATTCTCCGGTCGCCCAGATCTGGAAGATGAAGA AATTTCTAGGGATTGGATCTGAGTATCAACTTAAGCAATTAGTTTCCGAAGTTCGAGATTTCGCTAAAAAGGTCATACAAGAGAAGAAGAAACAGAGCAA AAATAAATCAAATGATTCGGATTCAGTCGATTTGCTCTCCCGATTCTTGAATCCCAATGATAACTACGACTACGACGATGATTTCATCGTCGACATCGTA ATCAGCTTCATCCTGGCGGGACGGGACACGACATCGGCGGCGTTGACATGGTTCTTCTGGCTGCTGTGGAAGAATCCAGAAGTCGAATCAAAGATTCTGG AAGAGATTGGGGGCGAGAAATCGAAATCGGACCTTCCGATTTACGAAGAAGTGAAGGACATGGTGTACACGCACGCGTCACTGTGCGAGGCGATGAGGCT GTACCCGCTGGGGCTTTCCCCGCCGGTGCCGATCGACACGAAGGTGGCAGTGAACGACGACGTTTTGCCGGACGGAACGGAGGTGAAGAAGGGGGTAAGG GTGTCGTATCATCCGTACGCGATGGGGAGGCTGGAGGAGATTTGGGGGGCGGATTGGGCGGAGTTTAAGCCGGAGAGGTGGCTTGAGATGAAAGATGGAG GAGAGAAGTGGAATTTTGTGGCGAGGGATCCGTACAGTTATGCAGTGTTTCAGGCGGGGCCGAGGATCTGTTTGGGGAAGGAAATGGCGTTTCTGCAGAT GAAAAGGGTGGTGGCGGGGGTTTTGAGGAGGTATAAGGTGGTGCCGGCGGCGATGAGGGGCGGGGAGGAGCCGGTGTTGATTTCTTATTTGACCACCAAG ATGAAGGGTGGGTTTCCGGTGAGGTTTCAAGAAAGGGAAATCTCCAAGGATTTGTAA
AA sequence Show only first row Show all	>Lus10033852 pacid=23172823 polypeptide=Lus10033852 locus=Lus10033852.g ID=Lus10033852.BGIv1.0 annot-version=v1.0 MVTELLAVFFLILSYYCIFSSSRKNKPKSQNPHYPKSYPFIGSALDIAANKERRVQWTSDILRRTPTATFTLDLAFGSRRIFTANTANVQHILKSHFLNY QKGFEFRSALFDLLGDGIFNADGDTWKLQRQLSSHEFNTRSLRKFVETVVDSELTNRLIPTISAAAATGSVLDLQDILQRFAFDNICVIAFGYDPVYLAP SLPEARFAVAFEDAVRISSERLNSPVAQIWKMKKFLGIGSEYQLKQLVSEVRDFAKKVIQEKKKQSKNKSNDSDSVDLLSRFLNPNDNYDYDDDFIVDIV ISFILAGRDTTSAALTWFFWLLWKNPEVESKILEEIGGEKSKSDLPIYEEVKDMVYTHASLCEAMRLYPLGLSPPVPIDTKVAVNDDVLPDGTEVKKGVR VSYHPYAMGRLEEIWGADWAEFKPERWLEMKDGGEKWNFVARDPYSYAVFQAGPRICLGKEMAFLQMKRVVAGVLRRYKVVPAAMRGGEEPVLISYLTTK MKGGFPVRFQEREISKDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033852 [exp]	0	1
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	6.3	0.9464
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	8.0	0.9474
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10017995 [exp]	8.9	0.9419
					Lus10025421 [exp]	11.5	0.9307
AT1G61215		BRD4	bromodomain 4 (.1)		Lus10011227 [exp]	15.6	0.9277
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	17.6	0.9443
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	18.0	0.9414
					Lus10041676 [exp]	18.4	0.9390
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	19.6	0.9377
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	19.9	0.9390

Compare expression of checked genes

Lus10033852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.