Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63450 421 / 3e-143 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G48520 419 / 2e-142 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT2G27690 390 / 3e-131 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G56630 388 / 2e-130 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 382 / 4e-128 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G01900 366 / 9e-122 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT5G08250 315 / 4e-102 Cytochrome P450 superfamily protein (.1) AT2G45970 316 / 5e-102 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G24540 313 / 7e-101 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT5G23190 313 / 3e-100 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 843 / 0 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 768 / 0 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 576 / 0 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 397 / 1e-133 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10012531 [exp] 384 / 3e-128 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10036024 [exp] 373 / 4e-124 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10032278 [exp] 317 / 2e-101 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10040687 [exp] 308 / 6e-99 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 307 / 9e-99 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042200 [exp] 634 / 0 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.005G220900 [exp] 629 / 0 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 627 / 0 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 625 / 0 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.012G096800 [exp] 418 / 4e-142 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031700 [exp] 400 / 4e-135 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.004G185300 [exp] 384 / 4e-129 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.009G145400 [exp] 381 / 1e-127 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.010G236700 [exp] 380 / 4e-127 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.001G331100 [exp] 379 / 2e-126 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10033853 pacid=23172723 polypeptide=Lus10033853 locus=Lus10033853.g ID=Lus10033853.BGIv1.0 annot-version=v1.0 ATGTTACTAGCCGTTGAGCTCATAGTAGCCACAACCTTCCTTATCATTTCGGCCCTATTCCTCTTCTTCTCCCCCAAGAAAACCACAAAACAAACCACCG CCGCCACCTCCCGCCGTCAGCCCAAACGCTACCCGTTAATCGGCCACTCACTTGAGCTGATCAAGAACAAGGAGAACCGAGTCGAATGGACTTCCGACAT GCTTCAAGCGTCCCCCACAGCTACAGTCGTCATACAAATCCTCGGCCGCCACCGCCTCATCACGGCCAATCCAGCCACCGTGGAGCACATCCTCAAGCTT CAGTTCCATAACTACCAGAAGGGCGAAGACAGTCGTGCAATCCTCTTCGACTTGCTCGGGGACGGCATCTTTAATGCCGACGGGGCCTCCTGGAAGTTCC AGAGGCAAGTCTCTAGCCATGAATTCAACACCAAGTCTTTGAGGCATTTCGTCGAACATGTTGTCGACGTTGAACTTTCCGACCGGTTAATTCCTATTCT CTCCGCCGCTGCTGCCAGCGGGGCAGTCCTCGATCTACAGGATATCTTACAACGATTCGCTTTCGACAATATTTGTCGAATTGCGTTCGGATACGACCCT GAGTACCTTCATCCGTCTCTACAGGAAGCAGAATTCGCTGCAGCTTTCGAAGAAGCGTCGATGATAAGCGCATACAGATTCATGTCTATGTTCCCCGTGA TATGGAAGATGAAGAGAGCTCTGAATTTAGGATCGGAGAAGAGGCTGAAGGAGGCTGTCGGTGTAATTAGGGATTTCGCTAAGCGGATCGTGAAGGAGAA GAAGGACGAGCTGGAGAAGAAATCCTCGCTCGATTCCGTCGATCTCTTGTCTCGATTCTTGAGCTCGGGGCATTCCGACGAGGATTTCGTCACCGATATT GTAATTAGCTTCATCCTCGCCGGACGGGACACGACCTCCGCCGCACTGACGTGGTTCTTTTGGCTAATCGCCGAGCACCCTGAAGTGGAGCGGAAAATCC TCGAAGAAATCCGTGAGAATTCGGAGAATCCTATCTTCGAGGAAGTGAAGGACATGGTGTACACTCACGCTTCCCTATGCGAGTCCATGAGGCTTTACCC GCCTGTGCCGATGGACACGAAGATCGCGGAGAACGATGACATTTTGCCTGACGGGACGGCGGTGAAAGCGGGAAATCGAATCACTTACCATCCATACGCG ATGGGGCGGTCCGAGCGGGTTTGGGGACCCGACTGGGCAGAGTTTCGGCCGGAGAGGTGGCTTAAAAGGGCCTCAGAGAATAGCGAGAAGTGGAATTTTG TGGCGAGGGATCCGTACAGGTACCCGGTTTTCCAGGCGGGGCCGAGGATTTGCTTGGGGAAGGAGATGGCGTTCTTGCAGATGAAACGAGTGGTAGCCGG AATATTGAGCAAGTTCAAGGTGGTAGCGGTGGCGGGAGATGGGTTTCGGCCAGTATATATTTCATTATTAACAGCGAAGATGAAAGGAGGGTTTCCGGTG AAGATTAAAGTGAGGGAGAACTAA
AA sequence Show only first row Show all	>Lus10033853 pacid=23172723 polypeptide=Lus10033853 locus=Lus10033853.g ID=Lus10033853.BGIv1.0 annot-version=v1.0 MLLAVELIVATTFLIISALFLFFSPKKTTKQTTAATSRRQPKRYPLIGHSLELIKNKENRVEWTSDMLQASPTATVVIQILGRHRLITANPATVEHILKL QFHNYQKGEDSRAILFDLLGDGIFNADGASWKFQRQVSSHEFNTKSLRHFVEHVVDVELSDRLIPILSAAAASGAVLDLQDILQRFAFDNICRIAFGYDP EYLHPSLQEAEFAAAFEEASMISAYRFMSMFPVIWKMKRALNLGSEKRLKEAVGVIRDFAKRIVKEKKDELEKKSSLDSVDLLSRFLSSGHSDEDFVTDI VISFILAGRDTTSAALTWFFWLIAEHPEVERKILEEIRENSENPIFEEVKDMVYTHASLCESMRLYPPVPMDTKIAENDDILPDGTAVKAGNRITYHPYA MGRSERVWGPDWAEFRPERWLKRASENSEKWNFVARDPYRYPVFQAGPRICLGKEMAFLQMKRVVAGILSKFKVVAVAGDGFRPVYISLLTAKMKGGFPV KIKVREN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033853 [exp]	0	1
AT4G02920			unknown protein		Lus10008160 [exp]	6.7	0.9722
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	9.2	0.9687
					Lus10031841 [exp]	11.4	0.9632
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	15.2	0.9660
					Lus10000858 [exp]	19.7	0.9645
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	24.1	0.9627
AT2G23770			protein kinase family protein ...		Lus10019661 [exp]	25.4	0.9606
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	28.1	0.9614
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	31.7	0.9629
AT1G17860			Kunitz family trypsin and prot...		Lus10013732 [exp]	31.9	0.9535

Compare expression of checked genes

Lus10033853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.