Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30690 167 / 4e-43 Protein of unknown function, DUF593 (.1) AT1G08800 160 / 2e-40 Protein of unknown function, DUF593 (.1.2) AT5G16720 127 / 3e-30 Protein of unknown function, DUF593 (.1) AT1G70750 124 / 4e-29 Protein of unknown function, DUF593 (.1) AT1G74830 98 / 4e-21 Protein of unknown function, DUF593 (.1) AT1G18990 98 / 5e-21 Protein of unknown function, DUF593 (.1) AT5G06560 72 / 9e-13 Protein of unknown function, DUF593 (.1) AT4G13630 71 / 2e-12 Protein of unknown function, DUF593 (.1.2) AT3G54740 69 / 6e-12 Protein of unknown function, DUF593 (.1.2) AT4G30830 66 / 5e-11 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014743 [exp] 1093 / 0 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10024869 [exp] 699 / 0 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10018782 [exp] 684 / 0 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10006566 [exp] 136 / 7e-33 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 133 / 7e-32 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 113 / 1e-25 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 105 / 3e-23 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10033123 [exp] 79 / 4e-15 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 76 / 4e-14 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220600 [exp] 452 / 1e-147 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 390 / 1e-124 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.019G007802 [exp] 274 / 5e-82 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.013G043400 [exp] 211 / 2e-57 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 205 / 1e-55 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 117 / 7e-27 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 105 / 3e-23 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 103 / 7e-23 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 101 / 6e-22 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 96 / 5e-20 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10033854 pacid=23172784 polypeptide=Lus10033854 locus=Lus10033854.g ID=Lus10033854.BGIv1.0 annot-version=v1.0 ATGGCTGCAAAAGGCTCGTCATTTGGCCCAGCAACAAGGAGGAGTCTGAAGGGTTTGACAAGTGCTCTGAGATCAGCAGCTTGTGAATGGCTTCTCATCT TCTTGTTACTTCTCGATGCCGTCTTTGCCTACCTCCTCACCAAATTCGCGCGTTACTGCAATCTGCAAGTCCCCTGCATCTTATGTTCGCGGCTAGATCA CATACTAGGCCACGAGAAACCCGGTTTCTACCGCGACCTCATCTGCACCAACCACCGAGCTGAGCTGTCATGCTTGATGTTCTGCCAAGACCACAATAAG CTCGCTGATGGCCGCTCAATGTGTGACGAATGCCTCGTATCTTTCTCAGTGAATTCGGATAAAAACATGCAAAGGGTTGCGGTTGGGAAACTTGGGTTTG ATCTTGGATCTAATTACCTCCTTCCTGGTTCCGTGGCCACCAAGTTATGTTCGTGTTGTCGTATGCCTTGGAGGTCAAGGCAGAGAGCAGATCGAATCCT GAAGCTGAAATCACCTAGGAGTTCCGTTTCCCCCAAGCCTCCTTTGCCAAATCGTTTGAACCAGCAGGAGAGCTTGAGGAAGATACGAGAGAAGTATTCT GGATCTTTAACTCCTTATCGTCTCGGGAGTAGAGGGTTCGATTCCTTATCCCATGTTGGATACACAGAGCTGAAGTTCAATTCTGATTCCGAGTCTGAGC TTCAGTATTCTGATGACGACGAATATCACAACTTCAATCGTGAATTGGAGGAGCTGCGGCACAAGGAAGTACATGATCCTACTGATGTTAATGCTTCTGA TCAAACAGATAGAGAAGCAGTAAAAGATGAAAGCATAAAACTTTCTCCTCGTGGAATCCCGGAGCTCATTACATCAAACCTGACAGAAAAGAAGAAAAGT GAGCAAAACAACCCTTCTGTGCTTAATTCTGATCCTTCTGTATTATCAGAACTCATGGCTATGGTTGACTCACCCTCGTCTTTTAAAGCTTCAAAAGGTT CAGATGGCATTGTAACATTCAACGATGCGAGAAATGAAGCTTTGAAGCTTATGGCTAATACATCAGCAGATGGCACTACTCAAGTTGATCATGATTTGCC GTCTACTACAGAAGTAGCTTCTTCAGAACACGAAAGAGTTGACGAGGATTTGAAGCCTTCCTCATCTAGAGATATCGATGCAGCATCGAAGAATAATTTT GAATCTCGTGAGAGTGAACCAAAGGTGAGTCTAGACTCGAGTCCCCGTAGTCCAGTTTCGAAAGAGAAAGTTGATCACAAGTCCAATGTGGAACCCGCGC TTGATTTAATCGTCGGTGAAATCGAGGGCGAAAGTATCGAGGAAAGATTAAGAAGACAAATAGAGCATGACAGGATCGTGATAAGTACGTTGACTAAGGA ACTGGAGGAAGAGCGAAGCGCCTCATCGATTGCCGCGAACCAGACAATGGCAATGATCACGAGGTTGCAAGCGGAGAAAGCAGCGCTCCATATGGAAGCG CTGCAGTATCTACGAATGATGGAAGAGCAAGCCGAATACGATGGAGAGGAGCTCGAGAAAGTAAATGACATCCTTGCCGAGAGGGAGAAGGAATTGCAGG ATTTAGAGGCCGAGTTAGAGTATTTCAGGTTACAATACCCTTACGATGAAGAGGAAGAAGAAGGTACAGTAGGGAGCTCGATTCCAAACAACACTGCAAT GTCTAGTACTACAAGTAGAGACGAGAAAGGCGATAACTTTGCTAAATCGTCGTGGCCAGACATCGAGGAAGAGAAGTCGTTCATTTTCCAGAGGTTGAAG AGTTTGGAGAGGAAGTTGCAGAAACTTTCTCGTTGTTCAGCTTCGCCTTATATGTCTGATAGCGAGTATTCTGACGAAACAGCTGATAGAGGAGGAGGAA TAATAGATACAGGGGAGTTTTTGTTAGGGAACAATGAGATTAGGAACGGCCAAAGAGCTCCGAACCCACAACACGAGGCTGCTGAATTCGGAACTCTTAA GAATGAGATCAGTGACTTGAATGAAAGGTTGGAAGCACTAGAAACTGACTGGAGTTTCCTTGAGCATGCTTTTAATTCGCTCGAGAGTGGGACAGGAGGG CTGCAGTTTGTTCAAGATATCGCTCATCGGCTTCAGGAACTGCGTAAACTCGGCTTTCGTAGTAGTAGTAGATATCAGCCTGTTCCTTCTTGA
AA sequence Show only first row Show all	>Lus10033854 pacid=23172784 polypeptide=Lus10033854 locus=Lus10033854.g ID=Lus10033854.BGIv1.0 annot-version=v1.0 MAAKGSSFGPATRRSLKGLTSALRSAACEWLLIFLLLLDAVFAYLLTKFARYCNLQVPCILCSRLDHILGHEKPGFYRDLICTNHRAELSCLMFCQDHNK LADGRSMCDECLVSFSVNSDKNMQRVAVGKLGFDLGSNYLLPGSVATKLCSCCRMPWRSRQRADRILKLKSPRSSVSPKPPLPNRLNQQESLRKIREKYS GSLTPYRLGSRGFDSLSHVGYTELKFNSDSESELQYSDDDEYHNFNRELEELRHKEVHDPTDVNASDQTDREAVKDESIKLSPRGIPELITSNLTEKKKS EQNNPSVLNSDPSVLSELMAMVDSPSSFKASKGSDGIVTFNDARNEALKLMANTSADGTTQVDHDLPSTTEVASSEHERVDEDLKPSSSRDIDAASKNNF ESRESEPKVSLDSSPRSPVSKEKVDHKSNVEPALDLIVGEIEGESIEERLRRQIEHDRIVISTLTKELEEERSASSIAANQTMAMITRLQAEKAALHMEA LQYLRMMEEQAEYDGEELEKVNDILAEREKELQDLEAELEYFRLQYPYDEEEEEGTVGSSIPNNTAMSSTTSRDEKGDNFAKSSWPDIEEEKSFIFQRLK SLERKLQKLSRCSASPYMSDSEYSDETADRGGGIIDTGEFLLGNNEIRNGQRAPNPQHEAAEFGTLKNEISDLNERLEALETDWSFLEHAFNSLESGTGG LQFVQDIAHRLQELRKLGFRSSSRYQPVPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30690			Protein of unknown function, D...		Lus10033854 [exp]	0	1
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	10.1	0.7086
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027322 [exp]	14.5	0.6560
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10002208 [exp]	18.5	0.6364
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	24.2	0.6615
AT3G26670			Protein of unknown function (D...		Lus10012589 [exp]	29.7	0.6487
AT3G26000			Ribonuclease inhibitor (.1)		Lus10037060 [exp]	33.0	0.6430
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	33.9	0.6520
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	40.7	0.6483
AT5G27920			F-box family protein (.1)		Lus10011626 [exp]	44.5	0.5222
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10015119 [exp]	45.9	0.6044

Compare expression of checked genes

Lus10033854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.