Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30630 805 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G06750 785 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G04280 573 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014744 [exp] 1057 / 0 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041167 [exp] 507 / 2e-176 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021226 [exp] 410 / 1e-140 AT1G04280 445 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021885 [exp] 412 / 1e-139 AT2G30630 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10022217 [exp] 374 / 1e-126 AT1G04280 416 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021884 [exp] 219 / 4e-67 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021225 [exp] 69 / 6e-13 AT1G06750 66 / 3e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220000 [exp] 830 / 0 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G043000 [exp] 816 / 0 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G162000 [exp] 599 / 0 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G162400 [exp] 521 / 0 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06414 [flax] [poplar] Zeta_toxin Zeta toxin
Representative CDS sequence Show only first row Show all	>Lus10033855 pacid=23172884 polypeptide=Lus10033855 locus=Lus10033855.g ID=Lus10033855.BGIv1.0 annot-version=v1.0 ATGGCGAATTCATTTCTCGTCTCCATCCTAACCTCTCAACCCTTTCCCCTCATTCATCATTTCGACACATTCCATCAGGTCATAATAGCCTCTTTCCTCG GATTGATCCTCGTAATCTCAGTGACTTACCGGTACCAGAAGCTCCAGGATCGGAGGATCGTCCCTCGGCTGAGACCGTCGCAGTCCGGCCGCCGCACTGA GAAGCTCGAAAGGTTTTCTCACTATGTAGCAAGACAGATGGGATTCGGGGACAGGAGGCAGTGCCCGCATCTGTGCAAGCTGGCGTCGGAGTACATTAGG AAGACGGAGACGTGCGAGGAAGACGTGTTCGCGTTCTTCGCCGATGAGCTAGACGCCGATTCCCTGTTCGTCAAGCTGGTTGAGGAGTTGGAGAGGTGCA TCCTAAGTTACTTCGCCTTCCATTGGACCCATGCCGATCTCATCATCAGTCAGGTTTTGAGTGCTGACATTGCAGAGCCCAAGAAGAAATTCAAGCACAT CGTCATGGCTGCCACTAGGGAACAGAGATTTGAGAGGGTGACTAAGGACTTGAAAGTGGCTAGGGTGTTCAATACATTGGTAGAGGAAATGAAAGCTATG GGGTTGGCATCAAATGATGATTCCTGTACAGAAGTCATGGCTCCTGTGGCTCATTCTGACCGAAGTCCAGTCCTCTTGTTCATGGGTGGTGGCATGGGTG GTGGCAAAAGTACTGTCCTCAAAGACATCCTCAAAGAACCATTTTGGGCGGGAGCATCAGGGAATGCAGTAGTGATTGAAGCAGATGCGTTCAAGGAATC GGATGTTATCTTCAAGGCTCTAAGCTCCAGGGGACATGTTGATATGATTCAGACAGCTGAACTTGTGCATCAATCCTCAACAGATGCAGCATCGTCCCTA TTAGTGACAGCACTGAACGACGGTCGAGATGTGATCATGGACGGGACGCTCTCCTGGCTGCCATTCGTGGTGCAGACCATAACAATGGCGAGAAATGTGC ACAGGAAACGTTACAGGATGGGAGCTGGGTATAGAGTAGCGGATGATGGAGCTGTAACAGAGAACTACTGGGAGCAAATTGAAGAAGAACAACCTCTTGA CGAAGGAAACAAGAAGAGAAAGCCTTACAGGATAGAGCTCGTTGGCGTTGTTTGTGATGCTTACCTAGCTGTCGTCAGAGGCGAAAAATGCAGGAGAGCC ATAATGTGCAGAAGAGCAGTAAGTGCGAGGTCACAACTGAAGTCGCACAAGAGATTTGCTAATGCCTTCTTAACTTACTGCCAATTAGTTGACAATGCCA GGCTATATTGCACCAATGTGTTGGAAGGCCCACCTAAGTTGATAGGATGGAAAGAGAGGGACAAGACACTGTTGGTTGATCCAGATGAAATCGACTGCTT AAAGAGAGTGGGGAAATTGAACGAGGAAGCAGACTCCATTCATGAACTATACCCAGTTCCCAACCCAGCTTGTGCTGCTGGTTCGATCTGGAAAGACATT GTGCTTTCACCTTCGAGGATCAACATTCAGAAAGAATTGAAGTATTCCATCCAGAAAGTTGAACGAGCTAAAAACATTACTCAAAGCTCTCGGATGTGA
AA sequence Show only first row Show all	>Lus10033855 pacid=23172884 polypeptide=Lus10033855 locus=Lus10033855.g ID=Lus10033855.BGIv1.0 annot-version=v1.0 MANSFLVSILTSQPFPLIHHFDTFHQVIIASFLGLILVISVTYRYQKLQDRRIVPRLRPSQSGRRTEKLERFSHYVARQMGFGDRRQCPHLCKLASEYIR KTETCEEDVFAFFADELDADSLFVKLVEELERCILSYFAFHWTHADLIISQVLSADIAEPKKKFKHIVMAATREQRFERVTKDLKVARVFNTLVEEMKAM GLASNDDSCTEVMAPVAHSDRSPVLLFMGGGMGGGKSTVLKDILKEPFWAGASGNAVVIEADAFKESDVIFKALSSRGHVDMIQTAELVHQSSTDAASSL LVTALNDGRDVIMDGTLSWLPFVVQTITMARNVHRKRYRMGAGYRVADDGAVTENYWEQIEEEQPLDEGNKKRKPYRIELVGVVCDAYLAVVRGEKCRRA IMCRRAVSARSQLKSHKRFANAFLTYCQLVDNARLYCTNVLEGPPKLIGWKERDKTLLVDPDEIDCLKRVGKLNEEADSIHELYPVPNPACAAGSIWKDI VLSPSRINIQKELKYSIQKVERAKNITQSSRM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30630			P-loop containing nucleoside t...		Lus10033855 [exp]	0	1
AT2G30630			P-loop containing nucleoside t...		Lus10014744 [exp]	1.0	0.8725
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	8.4	0.8435
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10027404 [exp]	8.4	0.8320
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	8.7	0.8401
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	11.6	0.8408
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	15.9	0.8315
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	19.8	0.8033
AT1G18610			Galactose oxidase/kelch repeat...		Lus10010913 [exp]	21.5	0.8241
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	26.3	0.8277
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	29.5	0.8103

Compare expression of checked genes

Lus10033855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.