Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08070 406 / 4e-133 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 401 / 5e-131 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 384 / 8e-125 MEF22 mitochondrial editing factor 22 (.1) AT3G11460 380 / 3e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G08820 374 / 2e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 378 / 7e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 370 / 3e-118 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 365 / 6e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 365 / 1e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 363 / 2e-117 SLO1 SLOW GROWTH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014746 [exp] 430 / 2e-149 AT3G49142 223 / 7e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 424 / 2e-140 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 417 / 4e-137 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 408 / 4e-134 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 408 / 2e-132 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10010320 [exp] 395 / 4e-130 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000706 [exp] 397 / 1e-128 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10031028 [exp] 392 / 2e-128 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 390 / 6e-126 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 432 / 3e-143 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 421 / 1e-138 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 417 / 4e-138 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 409 / 1e-134 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 400 / 5e-132 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 395 / 6e-129 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 392 / 1e-128 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.008G121400 [exp] 385 / 2e-127 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G135600 [exp] 387 / 4e-127 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G152000 [exp] 389 / 2e-126 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033858 pacid=23172871 polypeptide=Lus10033858 locus=Lus10033858.g ID=Lus10033858.BGIv1.0 annot-version=v1.0 ATGTTAGCTAATGTCATCCATTCACTCTCAAAAAGAATCAAACCTGTTACCCCAGTTATTGGTTCTCCATTTCCCTACAGTGCTAACTACCATTCCCTCC CTTCTAACCACCTATTGGTCTCTTGTTCAACCCTGTTGCACCTTAAATGCATCCATGCGCTTATTCTTACAAGGGGATCTCTCTGTAACCTCCTTGTATC TACAAAACTCGTCGCCTTGGCTTCTCAATTTTCCCCAAGAATGGACTATGCCCAAACCATATTTGATAGAGTGTCTCAAAAGGATGTTTTTGTTTGGAAT ACTTTGATTAGAGGTTATGCCGACGTGGGTCCTTGCCAAAAGGCTGTAACTTTGTACAGAAGCATGCACCAGAGTGGGTTATTACCAGACAACTATACTT TTCCTTTTGTTATTAGGTCATGTGCAGTTATATCTGCCCTAAAGGAGGGGACAGAAGTTCACTGCAATGTTGTTAAAAGTGGGTTTGATGTGGATGTGTT TGTACAGAGCTCTTTAGTTTCCATGTATTCCCAAGCTGGAGATATATTCAGTATGGAGAAAGTTTTTTGCGAAATGAGTGTTAGAAACATTGTTTCTTGG ACAGCTATGGTCGCTGGTTATGTCCAGAACGGGCTCTATGAGCAGGGTTTATCTTTATTCAAGGAGATGATTTGCTTAAAAGCACGGCCAAATGCAGTTA CTTTGGCAAGTGTCCTTCCTGCATGTGCTAGCTTGGAATTCTTGGACTTTGGGAAAATGATACATGTTTACGGTATCAAAGTAGGGGTCGACTCTGATAC TCCATTGATAAATTCTTTGATTGCACTATACGGGAAATGTGGATGTGTCGATACAGCCAGATCACTGTTCGACGGAATAGCTGTGAAAAACCTGGTTACA TGGAATGCAATGATTGCAGCTTATGAACATAATAATGCTGGAAAGCTTGCAATAAAGCTCTTCCGAAGAATGCTATGTGAGAAAGTGGAATATGACTATA TAACAATGGTTAGTGTCATTTCAGCTTGTGCTAGTTTGGGAGCATTGAGCACTGGGAAATGGATACATCAGCTAGTCAAGAAGAAGAGAGAGTTGGAGAC AAATGTATCAGTCTCAAATGCACTGACCGACATGTACGCAAAGTGCGGAAACATAGGCCAGGCAGAGGATGTTTTCAAGAATTTGACAGAAAAAACAGTT GTGTCCTGGACTTCAATTATCGGGGCTTTGGCGTACCATGGCCGTGCAATTGAAGCTCTTGAGCTCTTCGCGCAGATGAAAGAAGAGGGCACCAGACCGA ATGGCTTCACATTCACTGCTATCTTGACTGCTTGTAAGCATGCGGGTCTTGTGCATGAGGGGAGGAAGCAATTTGAGAGTATGTTCAAGGAATACTCCAT TGTTCCTGGAATCGAGCAGTGTGCTTGTATGGTCGATCTCCTTGGGAGAGCTGGTTGTTTGACTGAGGCTTACGAATTCATCGAGAGCATGCCGATTCGG GCGGATCCAAGTGTGTGGGGTGCATTACTCGGTGCTTGCAGAATTTATGAGGATTGCGAACTTGCTGAGCTTGTGGCAGAGAAGCTGATTAAGTTGGACC CTCAGGACATAACTCCATACGTCATTATGTCTCACATTTATTGTAATGCTGGCCGATCAGAAGATGTATCGAGGTTAAGAAAGTTGATGAGAGAAAGGGA ATTGAAGAAGTTACCTGGTCATAGTCTTGTCGAGGCAAATCGTCGACTTCATAGGTTTCTAGTAGATTCAAGGCCTCGACCATCTTGGCCAGCTGTGTGA
AA sequence Show only first row Show all	>Lus10033858 pacid=23172871 polypeptide=Lus10033858 locus=Lus10033858.g ID=Lus10033858.BGIv1.0 annot-version=v1.0 MLANVIHSLSKRIKPVTPVIGSPFPYSANYHSLPSNHLLVSCSTLLHLKCIHALILTRGSLCNLLVSTKLVALASQFSPRMDYAQTIFDRVSQKDVFVWN TLIRGYADVGPCQKAVTLYRSMHQSGLLPDNYTFPFVIRSCAVISALKEGTEVHCNVVKSGFDVDVFVQSSLVSMYSQAGDIFSMEKVFCEMSVRNIVSW TAMVAGYVQNGLYEQGLSLFKEMICLKARPNAVTLASVLPACASLEFLDFGKMIHVYGIKVGVDSDTPLINSLIALYGKCGCVDTARSLFDGIAVKNLVT WNAMIAAYEHNNAGKLAIKLFRRMLCEKVEYDYITMVSVISACASLGALSTGKWIHQLVKKKRELETNVSVSNALTDMYAKCGNIGQAEDVFKNLTEKTV VSWTSIIGALAYHGRAIEALELFAQMKEEGTRPNGFTFTAILTACKHAGLVHEGRKQFESMFKEYSIVPGIEQCACMVDLLGRAGCLTEAYEFIESMPIR ADPSVWGALLGACRIYEDCELAELVAEKLIKLDPQDITPYVIMSHIYCNAGRSEDVSRLRKLMRERELKKLPGHSLVEANRRLHRFLVDSRPRPSWPAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033858 [exp]	0	1
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	4.7	0.8753
AT5G08340			Nucleotidylyl transferase supe...		Lus10028973 [exp]	14.5	0.7913
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	17.2	0.8232
AT5G12220			las1-like family protein (.1.2...		Lus10036063 [exp]	19.4	0.8327
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	22.9	0.8281
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	23.1	0.8537
AT4G10920		KELP	transcriptional coactivator p1...		Lus10030245 [exp]	25.0	0.8205
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	26.6	0.8274
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	28.1	0.8295
AT3G61520			Pentatricopeptide repeat (PPR)...		Lus10040633 [exp]	33.2	0.7906

Compare expression of checked genes

Lus10033858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.