Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55190 117 / 6e-33 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13710 112 / 6e-31 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT1G17700 110 / 1e-30 PRA1.F1 prenylated RAB acceptor 1.F1 (.1) AT3G13720 104 / 4e-28 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G04260 101 / 5e-27 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) AT1G08770 99 / 1e-25 PRA1.E prenylated RAB acceptor 1.E (.1) AT2G40380 94 / 9e-24 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT3G56110 88 / 2e-21 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT2G38360 87 / 5e-21 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT5G01640 83 / 2e-19 PRA1.B5 prenylated RAB acceptor 1.B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014747 [exp] 262 / 9e-90 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10018774 [exp] 181 / 1e-57 AT1G08770 130 / 5e-38 prenylated RAB acceptor 1.E (.1) Lus10024861 [exp] 181 / 1e-57 AT1G08770 132 / 2e-38 prenylated RAB acceptor 1.E (.1) Lus10021996 [exp] 128 / 5e-37 AT1G08770 162 / 3e-50 prenylated RAB acceptor 1.E (.1) Lus10005088 [exp] 119 / 2e-33 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10034363 [exp] 119 / 2e-33 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10042535 [exp] 113 / 3e-31 AT1G08770 157 / 1e-48 prenylated RAB acceptor 1.E (.1) Lus10015631 [exp] 105 / 3e-28 AT1G55190 193 / 7e-63 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10026404 [exp] 100 / 9e-26 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219100 [exp] 178 / 1e-56 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 156 / 3e-48 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 151 / 2e-46 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 151 / 5e-46 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.003G035200 [exp] 110 / 2e-30 AT1G55190 161 / 2e-50 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.006G104400 [exp] 94 / 1e-23 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.016G126400 [exp] 94 / 1e-23 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.010G183300 [exp] 90 / 3e-22 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.019G124100 [exp] 88 / 2e-21 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.001G472300 [exp] 84 / 4e-20 AT5G56230 115 / 4e-32 prenylated RAB acceptor 1.G2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10033859 pacid=23172792 polypeptide=Lus10033859 locus=Lus10033859.g ID=Lus10033859.BGIv1.0 annot-version=v1.0 ATGGCTTCCCCTTCTTCTTCTTCTCCTCCGCCTCCTACCTCCTACGGCTACGACTCCTTCATATCCAACACCCTCTCACGCGCCGCCTCCAATTCCGCCG CCTTCTACGCCACTCGCCGTCCATGGCGCGAGCTCTTCAGCCTCCCCTCCTTCGCCCGCCCTTTCTCAATCAGGGAGGCCTCCGTCCGGATTAAGCGCAA CCTCGCGTACTTCCGCGTCAATTACGCCATGGCCGTCCTCTTCATCCTCTTCCTCAGCCTCCTCTGGCATCCCTTCGCCCTGATCGTCTTCCTAATCGTC TTCGTCGCCTGGTTCTTCCTCTTCTTCTTCCGCGGAGAGCCTATAGTCGTCTTCAGCCGCACAGTGGACGATCGGCTGGTTCTCTGCCTGCTGTCCGTCG TCACGATCGTCTCCTTGGTCTTCACTTCCGGCGTGTGGCTCAACGTGTTGGTTTCCGTTTTGATCGGGCTCGCGATTGTCCTGTTGCACGCCGTCTTTAG AGGGACTGAGGATTTGTATTCCGACGAGGTGGGTGCTGGAGGAGGTGGAGGTAGTGGTGGTGGTTTGTTCTCATTCGTCGGCGGTGGCCCTGCCAATACC GGATATTCTCCCATTTGA
AA sequence Show only first row Show all	>Lus10033859 pacid=23172792 polypeptide=Lus10033859 locus=Lus10033859.g ID=Lus10033859.BGIv1.0 annot-version=v1.0 MASPSSSSPPPPTSYGYDSFISNTLSRAASNSAAFYATRRPWRELFSLPSFARPFSIREASVRIKRNLAYFRVNYAMAVLFILFLSLLWHPFALIVFLIV FVAWFFLFFFRGEPIVVFSRTVDDRLVLCLLSVVTIVSLVFTSGVWLNVLVSVLIGLAIVLLHAVFRGTEDLYSDEVGAGGGGGSGGGLFSFVGGGPANT GYSPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	0	1
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041691 [exp]	7.3	0.6732
					Lus10039510 [exp]	7.7	0.6427
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10014747 [exp]	15.3	0.7636
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10019341 [exp]	18.7	0.7472
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10035281 [exp]	18.8	0.7193
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	38.7	0.6837
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	41.9	0.6936
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	44.1	0.6595
AT3G11690			unknown protein		Lus10029349 [exp]	44.4	0.6359
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10039861 [exp]	45.1	0.6880

Compare expression of checked genes

Lus10033859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.