Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 346 / 4e-116 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 343 / 4e-115 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 100 / 1e-22 RING/U-box superfamily protein (.1) AT5G13250 66 / 2e-11 RING finger protein (.1) AT1G28080 56 / 2e-08 RING finger protein (.1) AT1G03770 49 / 6e-06 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G61140 46 / 5e-05 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT5G44280 42 / 0.0006 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014749 [exp] 790 / 0 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 254 / 1e-80 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10021993 [exp] 254 / 2e-80 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10003261 [exp] 223 / 1e-67 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10006558 [exp] 204 / 2e-61 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10041603 [exp] 50 / 3e-06 AT5G06120 1654 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Lus10024116 [exp] 49 / 4e-06 AT3G54360 491 / 8e-175 zinc ion binding (.1) Lus10018609 [exp] 47 / 3e-05 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 46 / 5e-05 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219000 [exp] 425 / 6e-147 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 411 / 2e-141 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 335 / 3e-111 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 313 / 1e-102 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 308 / 5e-101 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 269 / 4e-86 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 131 / 1e-34 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.003G164800 [exp] 68 / 3e-12 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.001G062700 [exp] 67 / 6e-12 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.004G137200 [exp] 66 / 1e-11 AT5G13250 92 / 9e-21 RING finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033860 pacid=23172737 polypeptide=Lus10033860 locus=Lus10033860.g ID=Lus10033860.BGIv1.0 annot-version=v1.0 ATGGAGGCGAATCTGATGGTGGTGAAAGTGAGGAGGGAAATGATTGCGGCTTGCTTGACGTGTACTATCTGCAACAGGTTGTTCAGAGACGCCACCACCA TCTCCGAGTGTCTTCATACCTTTTGCAGGAAGTGCATTTATAGGAGGATATCGAATGATGGGTTGGAATCATGCCCAATCTGCAACATTGATCTGGGTTG TGTAGCACTCGAGAAACTAAGGGCGGATCACAATTTGCAAGATGTGAGATCAAAGATCTTCCCATTCAAAAGACAAAAGATTGAGGCTCCTGATGTTACG CCTGAAGAGGCAGCATCGGTTCCTTCGCCAGTGAAAAGAAAGGAGAGATCACTCTCGTCATTGGTGGTTAGTGCTCCCAAGGTTTCGACGCAAACTACAA CAACAGGAAGAAGAACCAAACTTGGTCCGAGGAAATGTAGTACTGCTGCGAGAAGCTCTAGTGTTCCCTTGGAGAAACCGGTCAAGGAGGATGCCCATCC AGAAGGTTGCCCGGAGAGTTCAAGTTCACGTGAAATAGAGAGCAACTTAAATAGCAAAAGAAGACAGAGTTCATCTGCTGAGCCAAGTCAATCTGCTTCT AACACTGAAGCACCAAAAGGTGCTAATCCGTGGGATTGTAAATCTGATCTTTGGCAACCTTTGAACTTTCTGGTGGAAGTTGCAAGTAGAACCAAGTCGT ACAAGACCAATTCACAACTCCCTGATGTAAAATTAGAGTCTATTGATCTCCCTGAAAGTGAACCACCAGTCCGGAAAACTAAATATATAGAAGATAAAGA GAGGTCAGAAGTCGATGAAAAAATCCAGATCACTACCAACTTCCAACAGCTAGAAGAACCAAAGAAGATGCACAGAATCCGACGAAGAAAGCCAGCTCGG AAGGGTATCTCATCTCAAGCTGTCCTATATGCTTCAAGTTCAAAGCAAGAAAGAAGAACTACTCCTGTTTGGTTCTCACTGGTTGCTTCCGATGAACAGG AAGGAGATGCATCTTTGCCGCAAATCTCAGCAAACTACTTACAGATAAAGGATGGAACAGTACCTGTTTCCTTCATTCACAAGTACCTGAAAAGGAAACT AGACCTCCTTAGTGAAGAGGAGATTGAGATAAAATGTATGGGAGAACCAGTGATACCTACGTCACAACTGCACAGTCTAGTTGATCGGTGGATACAGAAA CAATCATCGGCATCGGAACGAATGAAAGCGAGAGTTGGTTCGTCAGCTGAGGACTTTGTGATGGTTCTGGCATACGCTCGTAGAGCAGCAGCAGCAGCAG CAGAGCCACCGTAA
AA sequence Show only first row Show all	>Lus10033860 pacid=23172737 polypeptide=Lus10033860 locus=Lus10033860.g ID=Lus10033860.BGIv1.0 annot-version=v1.0 MEANLMVVKVRREMIAACLTCTICNRLFRDATTISECLHTFCRKCIYRRISNDGLESCPICNIDLGCVALEKLRADHNLQDVRSKIFPFKRQKIEAPDVT PEEAASVPSPVKRKERSLSSLVVSAPKVSTQTTTTGRRTKLGPRKCSTAARSSSVPLEKPVKEDAHPEGCPESSSSREIESNLNSKRRQSSSAEPSQSAS NTEAPKGANPWDCKSDLWQPLNFLVEVASRTKSYKTNSQLPDVKLESIDLPESEPPVRKTKYIEDKERSEVDEKIQITTNFQQLEEPKKMHRIRRRKPAR KGISSQAVLYASSSKQERRTTPVWFSLVASDEQEGDASLPQISANYLQIKDGTVPVSFIHKYLKRKLDLLSEEEIEIKCMGEPVIPTSQLHSLVDRWIQK QSSASERMKARVGSSAEDFVMVLAYARRAAAAAAEPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	0	1
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	1.4	0.8746
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10014749 [exp]	5.5	0.8341
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	7.1	0.8657
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Lus10016945 [exp]	7.2	0.8238
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	7.7	0.8632
AT3G26010			Galactose oxidase/kelch repeat...		Lus10037467 [exp]	8.3	0.8382
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	8.9	0.8666
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	9.3	0.8762
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	10.0	0.8422
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	10.1	0.8324

Compare expression of checked genes

Lus10033860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.