Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30575 538 / 0 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 537 / 0 GAUT6 galacturonosyltransferase 6 (.1.2) AT5G47780 442 / 1e-148 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 427 / 4e-142 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 382 / 2e-124 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 320 / 2e-102 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT2G20810 284 / 2e-88 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 281 / 3e-87 GAUT11 galacturonosyltransferase 11 (.1) AT3G25140 280 / 7e-87 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 279 / 2e-86 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014750 [exp] 998 / 0 AT1G06780 611 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10018773 [exp] 704 / 0 AT1G06780 639 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10024859 [exp] 698 / 0 AT1G06780 630 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10038739 [exp] 444 / 2e-148 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 417 / 3e-138 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 413 / 4e-137 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 413 / 2e-135 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 383 / 1e-120 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 348 / 7e-105 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218900 [exp] 631 / 0 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.016G001700 [exp] 444 / 9e-149 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.014G073800 [exp] 415 / 3e-137 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.006G001100 [exp] 410 / 3e-136 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 412 / 6e-136 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 382 / 1e-124 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.019G108900 [exp] 284 / 1e-88 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.004G111000 [exp] 285 / 2e-88 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 283 / 9e-88 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.013G146200 [exp] 282 / 1e-87 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10033861 pacid=23172852 polypeptide=Lus10033861 locus=Lus10033861.g ID=Lus10033861.BGIv1.0 annot-version=v1.0 ATGGCGTCACTTTCCTCGCTTCTTTCCTTCCATAATCTGAGGAGGAACAAAGACTTGGAATGCAAGTTTTGGTTTTGGTTAAAGATTATCAAACAAAGTG GAGTACTGATTGTACTGATTGGACTTGGAACTAATTTTATCTGGTGGTGGATGCAGAAGTATAGGGCAGATTCTTTGGAGATTCATGCCATTGAGGAGGC AGATGAAGGCTTGGAAGAACCTAAACTTGTTGTTTATCAAGAGGACTTGAGCCAGGTTTCAGGAAATAATCAAGATAGAGAGGCAGAAGTTCAGCACTTG CAGACCACCAAAACATCATCGTCAAGGTCAGTTGAAGCGATATTAGCAGTGGCGAGATGTTTGCCTGTTAATGATTGCTTACACTTTGCTTGCCAGAGAA GTTCCAGAGATCGAAAAGCAAGACATGCTTCGCAGAAAGAAACAGATAGGAAGATCAAGGAGATACAAGATAACGTCATTCAAGCTAAAGTGTACTTGAG TCTTTCACCACCTGGAAGCAACACCCACCTAGTGAAACAATTGAGACAGAGGATCAAAGAATTAGAACGTTATAGTGAAGGCACCAAAGACAAAGATCTA CCCAAGAGCGCCCGAGGTAAAATGAAGGCCATGGAATTAACCTTGCTCAAGGTGAACCGAGTCTACCAGAACTGTGTGGACATTTCCAGAAAGCTCCGAG CCATGACTTACACAGCTGAGGAACAGGTTCGAGCGCATAAAGATGAAGCATCCTATCTTGTAAGGCTTGCAGCAAGAAGTACACCAAAAGGGTATCATTG TCTTTCCCTCCGCCTAACAGCAGAGTTCTTTGCTATGTCACCAGATGAGAGACAGTTCCCTAATCAACATAGATTACATGATCCTCATCTCCACCACTAT GCTCTTTTCTCTGACAATATTCTGGCTTGTACAGTCGTCGTCAATTCTACTGTATCTTCTGCCCAGGAGCAAGAAAAGGTAGTGTTTCATGTGGTGACTA ATGCTCTAAACCTCCCTGCAATATCAATGTGGTTCTTGCTATACCCTCCTGGGAAGGCTACGATATATGTCGAGAGCATTGACAAATTTGAGGGGCTGAC TGCAAACTACAATTGGATACTGAACAAGCAAAATTCGAGTGACCCGAGATACACATCAGACTTGAATCATCTTCGTTTCTATCTACCAGATGTGTTCCCT AAGTTGAAAAAGATTGTGCTTTTGGACCATGATGTTGTGGTGAGGAGAGATCTAGCAGGACTTTGGGGTTTGGATTTGAAAGGGAAAGTCAATGGAGCGG TGGAAACTTGCCATGATGAGAATGATCCTTCTTTTCGTCGCATGGATATGCTCATCAACTTCTCAGATCCTTATGTTGCAAGGAAATTTAAAGCCGGAGC CTGCACCTGGGCATTTGGAATGAACATGTTTGATCTCAAAGAGTGGAGGAGACGAGCTTTAACTTCCCTCTACCATAAATATTTGCGAATGGGCAGTAAA AGAAGACTATGGAAATCAGGGAGCTTGCCTCTGGGTTGGGCAACTTTCTACAACAGGACGATAGGGATAGATAGGAGATGGCATCGGCTTCTGGCGCTTG GATACGAGTCAAAAGGTGTGGACTACGATGTTGATAATGATGAAGATGATGGGATTGAGGAGGCAGCAGTGTTACACTACGACGGAGTGATGAAACCATG GCTAGATATTGGGATATCAAAGTACAGAAGCTACTGGACTGCATTCCTTAATTACAACAACCCCCATTTTCAGCAATGCAATATCCATGAATGA
AA sequence Show only first row Show all	>Lus10033861 pacid=23172852 polypeptide=Lus10033861 locus=Lus10033861.g ID=Lus10033861.BGIv1.0 annot-version=v1.0 MASLSSLLSFHNLRRNKDLECKFWFWLKIIKQSGVLIVLIGLGTNFIWWWMQKYRADSLEIHAIEEADEGLEEPKLVVYQEDLSQVSGNNQDREAEVQHL QTTKTSSSRSVEAILAVARCLPVNDCLHFACQRSSRDRKARHASQKETDRKIKEIQDNVIQAKVYLSLSPPGSNTHLVKQLRQRIKELERYSEGTKDKDL PKSARGKMKAMELTLLKVNRVYQNCVDISRKLRAMTYTAEEQVRAHKDEASYLVRLAARSTPKGYHCLSLRLTAEFFAMSPDERQFPNQHRLHDPHLHHY ALFSDNILACTVVVNSTVSSAQEQEKVVFHVVTNALNLPAISMWFLLYPPGKATIYVESIDKFEGLTANYNWILNKQNSSDPRYTSDLNHLRFYLPDVFP KLKKIVLLDHDVVVRRDLAGLWGLDLKGKVNGAVETCHDENDPSFRRMDMLINFSDPYVARKFKAGACTWAFGMNMFDLKEWRRRALTSLYHKYLRMGSK RRLWKSGSLPLGWATFYNRTIGIDRRWHRLLALGYESKGVDYDVDNDEDDGIEEAAVLHYDGVMKPWLDIGISKYRSYWTAFLNYNNPHFQQCNIHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10033861 [exp]	0	1
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	39.1	0.6145
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	41.6	0.6258
AT1G73770			unknown protein		Lus10007968 [exp]	44.0	0.5556
AT5G65960			GTP binding (.1)		Lus10035977 [exp]	50.4	0.6288
AT2G29590			Thioesterase superfamily prote...		Lus10040701 [exp]	53.1	0.5294
AT5G19090			Heavy metal transport/detoxifi...		Lus10004465 [exp]	55.4	0.5724
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10008701 [exp]	77.4	0.5560
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10041243 [exp]	81.6	0.5778
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	84.8	0.5860
					Lus10007413 [exp]	101.3	0.5736

Compare expression of checked genes

Lus10033861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.