Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58160 464 / 3e-151 XI-16, MYA3, ATXIJ, ATMYOS3, XIJ MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08730 438 / 2e-139 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G54560 422 / 2e-133 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT5G20490 413 / 1e-130 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G04160 406 / 8e-128 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT5G43900 405 / 2e-127 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G17580 398 / 9e-125 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G31900 397 / 2e-124 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT2G33240 371 / 3e-114 ATXID, XID myosin XI D (.1) AT1G04600 369 / 1e-113 ATXIA, XIA myosin XI A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014753 [exp] 863 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021570 [exp] 436 / 2e-138 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10005521 [exp] 426 / 9e-135 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10003315 [exp] 410 / 1e-128 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 401 / 1e-125 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 394 / 5e-124 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10043153 [exp] 381 / 5e-118 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 379 / 8e-117 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10017160 [exp] 374 / 7e-116 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041800 [exp] 504 / 2e-167 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1) Potri.013G043900 [exp] 432 / 2e-137 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.002G254300 [exp] 427 / 2e-135 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.001G199200 [exp] 427 / 3e-135 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.019G013800 [exp] 426 / 4e-135 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 426 / 9e-135 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G145700 [exp] 418 / 5e-132 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.009G025300 [exp] 416 / 4e-131 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 414 / 8e-131 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G220000 [exp] 302 / 3e-90 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain)
Representative CDS sequence Show only first row Show all	>Lus10033865 pacid=23172880 polypeptide=Lus10033865 locus=Lus10033865.g ID=Lus10033865.BGIv1.0 annot-version=v1.0 ATGAGAGGAAGTCTGGTCCCAAAATCAACTCACGAGACATTTGCACAGAAGCTATATCAGACATTCAAAGATCACAAGCGGTTCATAAAGCCAAAATTGG CTCGATCAGAGTTCACCATTGTCCATTACGCAGGAGAGGTCCTCTATCAATCTGAACAATTTTTGGACAAAAACAAAGACTACGTTGTTCCTGAGCACCA GAATTTGTTGAGTGCTTCTGAATGTTCTTTTCTGCAACGCCTTTTTCCTTCACTGTCCGAGGAAACAAGCAAACCATCCAAATTCTCATCTATTGGTTAT AGGTTTAAGCTTCAACTGCAGCAGTTGATGGAGATCTTAAATTCCACAGACCCTCACTTTGTCAGATGTGTGAAGCCAAATCACATTTTAAAACCTACCA TCTTTGAGAATCAATATGTCATGCAACAACTACGTTCTGGTGGAGTTTTAGAGGCAATCCGAATCAAATGTGCAGGATACCCTGCCCATAAGACCTTTGA GGATTTCCTGCATCGATATAGTATTATAGCTCCAGAGGTTGTGAAAGGAAGCTTTGAAGAAAAGGCGGCATGCAAATGGATACTGGAAAAAACGGAGATT ACTGAATATCAGATGGGGTTGACACAAGTGTTCTTGAAAGGCAACCAGATGGCTGAGTTAGATGCTCAAAGGGCGAAAATGTTACGGAACTCAGCTACAG TCATTCAAAGGCGAGTTAAAACTCGTTCGAGTCGTAAAAAGTTTGTTCTCATGCGCCAATCTTCAATCCATATACAATCTCACTGGAGAGGAAAAATGGC ACGGAACTCATACAAGGAAAAGAGAAGAGATGTCGCTGCTGTAAAAATTCAGAAGAATTTGCGTAGGCAAGTTGCTAGGAGGACTTACTCTGAGACGAAG TCTTCTGCAATCATCCTGCAGACTGCTTTACGAGCAATGGCCACACGAGAGCACTTCTATAGAAGATTGGAAACTAAGTCAGCAACGAGAATCCAGGCTA TTTGGCGCCGCCGTAGCGCCATTCTTGACTATAAAGAAATCCAAAGAATAAGTATGGAAAGAGATGCACTCTTGCGTCAACAACAACTTGAAGAATCACA ACGCGCAGTTGCAGAAGCAGAGGAATTGGCTCGTAAAGCAGAGGAATTGGCTCGCGAGGCCGAGGAAAGTAGATCACATACAGCTGAAGAGCAAGCTTCT CACGGAGATTCTGATGGCGAAGGAGCTAATCCAGAGGAGGAAAATTGGAAGTTCTTGCTTTGGGCAGAGAAGCAAAGAGCAGACAATGCAGAGAGGAAAT ACGAGGAATCAGTAGAATTGTGTGAGAGAAGGCGTGTGAAACTAGAAGAAACGGAGTACAGGGTTTATCAACTGCAAGCTTCTCTCAATAGGATGTTGGA GCCCATCTCAGAACAATTTTCCGAGCTGAAAGAGCTATTGAATCATTCCAACAACTCGGCATCAACTTCGGGAAGCAACGGTAACTCTGTGCATGTTCAT GCTGCTTCTGATAAATTCTTACTACCTGATCAAACCAATTGTAACTTTTGA
AA sequence Show only first row Show all	>Lus10033865 pacid=23172880 polypeptide=Lus10033865 locus=Lus10033865.g ID=Lus10033865.BGIv1.0 annot-version=v1.0 MRGSLVPKSTHETFAQKLYQTFKDHKRFIKPKLARSEFTIVHYAGEVLYQSEQFLDKNKDYVVPEHQNLLSASECSFLQRLFPSLSEETSKPSKFSSIGY RFKLQLQQLMEILNSTDPHFVRCVKPNHILKPTIFENQYVMQQLRSGGVLEAIRIKCAGYPAHKTFEDFLHRYSIIAPEVVKGSFEEKAACKWILEKTEI TEYQMGLTQVFLKGNQMAELDAQRAKMLRNSATVIQRRVKTRSSRKKFVLMRQSSIHIQSHWRGKMARNSYKEKRRDVAAVKIQKNLRRQVARRTYSETK SSAIILQTALRAMATREHFYRRLETKSATRIQAIWRRRSAILDYKEIQRISMERDALLRQQQLEESQRAVAEAEELARKAEELAREAEESRSHTAEEQAS HGDSDGEGANPEEENWKFLLWAEKQRADNAERKYEESVELCERRRVKLEETEYRVYQLQASLNRMLEPISEQFSELKELLNHSNNSASTSGSNGNSVHVH AASDKFLLPDQTNCNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	0	1
AT2G22530			Alkaline-phosphatase-like fami...		Lus10025722 [exp]	1.0	0.8927
AT1G50120			unknown protein		Lus10013430 [exp]	4.6	0.7797
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	4.9	0.7951
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	6.9	0.7768
AT3G49000			RNA polymerase III subunit RPC...		Lus10033989 [exp]	10.8	0.7465
AT2G23093			Major facilitator superfamily ...		Lus10014854 [exp]	11.8	0.7559
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	12.4	0.8251
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	14.0	0.7308
AT5G33280			Voltage-gated chloride channel...		Lus10038118 [exp]	14.2	0.7077
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Lus10036160 [exp]	16.2	0.7503

Compare expression of checked genes

Lus10033865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.