Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38940 201 / 4e-63 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT3G54700 196 / 3e-61 PHT1;7 phosphate transporter 1;7 (.1) AT5G43350 186 / 2e-57 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT2G32830 186 / 4e-57 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT5G43360 180 / 2e-55 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43370 165 / 2e-49 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT5G43340 131 / 7e-37 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT4G08895 113 / 6e-33 inorganic phosphate transporter family protein (.1) AT1G20860 95 / 1e-23 PHT1;8 phosphate transporter 1;8 (.1) AT1G76430 94 / 2e-23 PHT1;9 phosphate transporter 1;9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014754 [exp] 215 / 2e-68 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10003560 [exp] 192 / 1e-59 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10033886 [exp] 191 / 2e-59 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10011826 [exp] 177 / 9e-54 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 171 / 2e-51 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10016635 [exp] 151 / 3e-44 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10024884 [exp] 127 / 1e-38 AT2G38940 215 / 1e-68 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10025163 [exp] 99 / 3e-25 AT1G76430 431 / 5e-148 phosphate transporter 1;9 (.1) Lus10016042 [exp] 99 / 7e-25 AT1G76430 542 / 0.0 phosphate transporter 1;9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223600 [exp] 204 / 4e-64 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.002G038900 [exp] 181 / 2e-55 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 180 / 4e-55 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.010G072000 [exp] 155 / 8e-46 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071700 [exp] 154 / 3e-45 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071600 [exp] 152 / 2e-44 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071500 [exp] 151 / 3e-44 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175700 [exp] 145 / 4e-42 AT3G54700 699 / 0.0 phosphate transporter 1;7 (.1) Potri.005G175500 [exp] 140 / 4e-40 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.005G256100 [exp] 104 / 4e-27 AT1G76430 613 / 0.0 phosphate transporter 1;9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033866 pacid=23172776 polypeptide=Lus10033866 locus=Lus10033866.g ID=Lus10033866.BGIv1.0 annot-version=v1.0 ATGACGGTGTTCATGTTCGCCCTCGCGATTCCTTACGACCATTGGACGCACAGGGAGAATCGGATCGGGTTAGTGATTATGTACTCGCTGACGTTCTTCT TCGCGAACTTCGGGCCGAATGCGACGACGTTTGTGGTCCCCGCGGAGATTTTCACGGCCAGGGTGAGATCGACGTGCCACGGGATATCGGCGTCCGGGAA AGTAGGGGAGATGGTCGGGGCGTTCGGGCTCTTGTACTTGGCGCAGAATAAGGACAAGGCGAAGGTGAAGGCAGGGTATCCGGCGGGGATTGGGGTGAAG AATTCGTTACTAGTGTTGGGAGTGGTGAATTTTTGGGGATGGCGTTCACTTTCTTGGTGCCGGAATCCAATTGGAAGAGATGTCCGGCGAGAATGA
AA sequence Show only first row Show all	>Lus10033866 pacid=23172776 polypeptide=Lus10033866 locus=Lus10033866.g ID=Lus10033866.BGIv1.0 annot-version=v1.0 MTVFMFALAIPYDHWTHRENRIGLVIMYSLTFFFANFGPNATTFVVPAEIFTARVRSTCHGISASGKVGEMVGAFGLLYLAQNKDKAKVKAGYPAGIGVK NSLLVLGVVNFWGWRSLSWCRNPIGRDVRRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10033866 [exp]	0	1
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	1.4	0.9256
					Lus10011631 [exp]	2.8	0.8972
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10024776 [exp]	2.8	0.8915
AT4G03230			S-locus lectin protein kinase ...		Lus10033752 [exp]	5.3	0.8658
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	5.7	0.8916
AT3G42150			unknown protein		Lus10031451 [exp]	8.4	0.8281
AT1G22540			Major facilitator superfamily ...		Lus10001287 [exp]	8.9	0.8458
AT2G38420			Pentatricopeptide repeat (PPR)...		Lus10019697 [exp]	9.3	0.8054
					Lus10014031 [exp]	10.4	0.8451
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10040339 [exp]	10.4	0.8111

Compare expression of checked genes

Lus10033866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.