Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58170 187 / 8e-63 ATBET11, ATBS14A ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) AT4G14455 149 / 3e-47 ATBS14B ,ATBET12 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024876 [exp] 216 / 2e-66 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 165 / 3e-48 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10041158 [exp] 150 / 2e-47 AT4G14455 164 / 6e-53 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Lus10021879 [exp] 102 / 7e-29 AT4G14455 110 / 4e-32 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Lus10009926 [exp] 95 / 3e-26 AT3G58170 81 / 6e-21 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Lus10014756 [exp] 100 / 1e-25 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10017686 [exp] 39 / 0.0004 AT1G28490 299 / 8e-103 syntaxin of plants 61 (.1.2) Lus10018642 [exp] 39 / 0.0005 AT1G28490 334 / 7e-117 syntaxin of plants 61 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041500 [exp] 203 / 7e-69 AT3G58170 202 / 7e-69 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.005G221600 [exp] 201 / 3e-68 AT3G58170 206 / 4e-70 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.010G074100 [exp] 154 / 3e-49 AT4G14455 147 / 1e-46 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Potri.008G164600 [exp] 40 / 2e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10033868 pacid=23172727 polypeptide=Lus10033868 locus=Lus10033868.g ID=Lus10033868.BGIv1.0 annot-version=v1.0 ATGTATTCCACCCATTTATCAATTGAATTCCCTACTCTTTTGTTACACAGAGATGTCCGAAACAACAAAGTAGCTCTCTTTGATGGCATCGAGGAGGGTG GAATCAGAGCTTCTTCTTCTTACTCCCATGAAATTGATGAGCAAGACAATGAACAAGCTCTCGGAGGTTTGAAAGACAGAGTCAATCTGCTGAAACGGCT ATCTGGTGATATACATGAAGAGGTGGAGGGGCACAACCGGATGCTTGATGGAATGGGCAATGATATGGATGCATCCAGAGGAGTCCTGTCAGGAACGATG GATCGTTTCAAGACGGTATTCGAAACGAAATCGAGCAGGAGAATGGCTACGCTGGTGGCATCATTTGTGGTGTTATTCCTGATTGTGTATTATCTAACTC GGTGA
AA sequence Show only first row Show all	>Lus10033868 pacid=23172727 polypeptide=Lus10033868 locus=Lus10033868.g ID=Lus10033868.BGIv1.0 annot-version=v1.0 MYSTHLSIEFPTLLLHRDVRNNKVALFDGIEEGGIRASSSYSHEIDEQDNEQALGGLKDRVNLLKRLSGDIHEEVEGHNRMLDGMGNDMDASRGVLSGTM DRFKTVFETKSSRRMATLVASFVVLFLIVYYLTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	0	1
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	1.0	0.9487
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Lus10011156 [exp]	2.4	0.9308
AT1G55160			unknown protein		Lus10019322 [exp]	2.4	0.9348
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019388 [exp]	2.4	0.9338
AT3G61113			Ubiquitin related modifier 1 (...		Lus10041378 [exp]	3.2	0.9313
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	3.5	0.9317
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	9.9	0.9202
AT1G29040			unknown protein		Lus10013930 [exp]	10.0	0.9120
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	10.8	0.9261
AT1G04555			unknown protein		Lus10014458 [exp]	11.3	0.9277

Compare expression of checked genes

Lus10033868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.