Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57170 463 / 6e-156 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003248 [exp] 322 / 1e-105 AT3G57170 215 / 2e-66 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1) Lus10003249 [exp] 219 / 2e-65 AT3G57170 53 / 2e-08 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1) Lus10014756 [exp] 103 / 7e-23 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10035602 [exp] 66 / 2e-12 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044500 [exp] 722 / 0 AT3G57170 470 / 1e-158 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05024 [flax] [poplar] Gpi1 N-acetylglucosaminyl transferase component (Gpi1)
Representative CDS sequence Show only first row Show all	>Lus10033869 pacid=23172826 polypeptide=Lus10033869 locus=Lus10033869.g ID=Lus10033869.BGIv1.0 annot-version=v1.0 ATGAGAAGAAACTGCCGTATTTGGTGGCCAAAACAGCTTTCTAATGAGCCATCCTCGAATGAATACTATCTGTTTGGTTGGTTTATTTCTTCCTCTTCAG CATCCATTGATGTTGTGGTAGCGTTTTGGTGCAATAAGGTCTCACTCTCCAGTTGCCAATCTAGGTTTCAGGAAATCATCCATGATACAAATGGAAGGAT GCCTGTGTGCCTACAAGAGCAATCATGTTTCTGCCTTCTGGGTCAATACTCCACACCGTTGAACAGCAATGGTGAAAGCCGTAATGTCAGTGTAGAAGAA GAGAATGAAGTATGGTCCTCTTCTCACGACATTGCGTTGGTGAAAAAGAGGCGACCTTCATTTCGAGAACACAGTGAAGAAGGTGTTCGAGGATGTAATC AGCTTGATGGATTTGTTCAACAATGTGGGGAGAATAGCAGCGAAGGAGACTATCGGATCCATTTGATACACAAGTCTAGTGACAAATCTGGTGGAGGCAG GATTCCTCAGTTGCATCATGTTCACTGGAAAGGGCAAGAAGTAGTTCAATGCAATGTTCACGTAATACTGTATGATATTCCTGTCTATGGTGAACAACAC TTTACAATGAACCATTGGACTTCCTCCAAGAAAGTGGAGGCTACTTCAAAGAAACTTAAGTGGGTTGATGAGCTTCAAAAAGGTCAAGCTGTATTTGACA TGGATGCAACCATTTTGGCTGTGAACAGTGCTTCGGCTGCCGGAAAAGCTCTTAGGAGACATATTGATTCTGACAGATCTTGCTCCATCAAGTGCATGTA TCTTGTTTCAGTCTGGAAAGCAATAGCTTGTTTCTTAGCATCGCTTTCCACTATAATGTATTTGATTCTCCAACTGTTCCACAAGGTCTCTATGTTTGGA TGGGGAAAATGGTTATGCATAAGGCCTGCAAAGATTTTCCGTACTACATGGAGAAATATAGAGATCCGCTGCAGTCAGATAATTTATTGGCCGATTTTCC TAGAGGATAATAGTATTAGGTTAAGAGCATGTGTGGAGTATGCAGAACGAGCTGCATTGCATAGGCATTCTATGTGGACTAGTTTACTAGTCGATCTTCT TTTCGGAAACTTGATTGGCTTAGTACTCTTTTCTCAGGCGGAATCTGTATGGATGTGGGTCTCGTTCTTTGCCAAAGCCTTGACAAATGGGATATTGCGA TCTGGTTGTGTGTGGTTGATGGGAGTACCAGCTGGATTTAAGTTAAATACAGAGTTAGCAGGAATACTGGGCATGATCTCTTTGAATGCAATACAAATAT GGTCTACACTATGGGTCTTCATCGATTTCCTCGTCATTTATTTCATTAAGGGGCTCGCTGTATTGGGAACACTTTTTGGAGTAACTATACCTGCTGCTTT GGTAATTGATATTGTTGGGTTGGGGACTGCACACGTTTCTGCCCTTCACTGGGGCATCTCACTCTTATATTACAATCAGATACAAGCACTAGGTGCAATA TGGCGTCTTTTCAGGGGGAGAAAAAAGAATCCTCTACGCCAAAGGCTAGATAGTTACGACTACACAGTGAAGCAACATGTTGTTGGTTCTCTTCTCTTCA CTCCGCTTCTTCTTTTACTACCAACTACCTCTGTTTTCTATATTTTCTTCACTATATTGAACACATCCATTACCATGGTTTGTACAACGATCGATGTCAT CATATCTATGATCCATGGTACACCTTATTTTAAAATTTTCCTTTGGCTGTCCCGACGTAGGAGATTCCCTTCTGGTATATGGTTTGAGATTTTATCTTGT AGTAGCGATTGCCAGGGATCGGCATATCTAAGAGACGTCCGTTTGCCAAAAAATCCACAGCCTAAGGAGGGTATAGAAACAAAGACAACAGATAATATCG TCTCGGTTCTCCACAGCAATTGTCTCAGCATTGGAGACTTAGTCTTGCCTCACTATAGGGAGGTTTTCTCTGGGGTTTCTGGTTTTCTCATTACGTCAGC CCAGGGAGCTCTTACTGGAATAAGAACTGCGTCAAGATTGGATTCCAAGCTCCCATCAAAATTGCCGTGGGTGTCTATACCTACCGGGGAGTACTGGGCC CTGTGCTACAGTTCAGTAATGGAATGCATGCCAGAACATTTGAGGATGCAACCATAG
AA sequence Show only first row Show all	>Lus10033869 pacid=23172826 polypeptide=Lus10033869 locus=Lus10033869.g ID=Lus10033869.BGIv1.0 annot-version=v1.0 MRRNCRIWWPKQLSNEPSSNEYYLFGWFISSSSASIDVVVAFWCNKVSLSSCQSRFQEIIHDTNGRMPVCLQEQSCFCLLGQYSTPLNSNGESRNVSVEE ENEVWSSSHDIALVKKRRPSFREHSEEGVRGCNQLDGFVQQCGENSSEGDYRIHLIHKSSDKSGGGRIPQLHHVHWKGQEVVQCNVHVILYDIPVYGEQH FTMNHWTSSKKVEATSKKLKWVDELQKGQAVFDMDATILAVNSASAAGKALRRHIDSDRSCSIKCMYLVSVWKAIACFLASLSTIMYLILQLFHKVSMFG WGKWLCIRPAKIFRTTWRNIEIRCSQIIYWPIFLEDNSIRLRACVEYAERAALHRHSMWTSLLVDLLFGNLIGLVLFSQAESVWMWVSFFAKALTNGILR SGCVWLMGVPAGFKLNTELAGILGMISLNAIQIWSTLWVFIDFLVIYFIKGLAVLGTLFGVTIPAALVIDIVGLGTAHVSALHWGISLLYYNQIQALGAI WRLFRGRKKNPLRQRLDSYDYTVKQHVVGSLLFTPLLLLLPTTSVFYIFFTILNTSITMVCTTIDVIISMIHGTPYFKIFLWLSRRRRFPSGIWFEILSC SSDCQGSAYLRDVRLPKNPQPKEGIETKTTDNIVSVLHSNCLSIGDLVLPHYREVFSGVSGFLITSAQGALTGIRTASRLDSKLPSKLPWVSIPTGEYWA LCYSSVMECMPEHLRMQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	1.0	0.9298
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	6.5	0.8847
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	7.1	0.8849
AT5G58100			unknown protein		Lus10027581 [exp]	7.1	0.8722
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	8.8	0.8721
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	8.9	0.8611
AT1G73970			unknown protein		Lus10036972 [exp]	10.1	0.8459
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	10.2	0.8637
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10014662 [exp]	10.6	0.8529
AT1G42440			unknown protein		Lus10013232 [exp]	11.3	0.8722

Compare expression of checked genes

Lus10033869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.