Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11010 141 / 1e-40 Pre-mRNA cleavage complex II protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036655 [exp] 194 / 6e-61 AT5G11010 467 / 2e-165 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10014756 [exp] 196 / 4e-60 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033124 [exp] 190 / 3e-59 AT5G11010 473 / 7e-168 Pre-mRNA cleavage complex II protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073500 [exp] 163 / 5e-49 AT5G11010 480 / 2e-170 Pre-mRNA cleavage complex II protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06807 [flax] [poplar] Clp1 Pre-mRNA cleavage complex II protein Clp1
Representative CDS sequence Show only first row Show all	>Lus10033870 pacid=23172761 polypeptide=Lus10033870 locus=Lus10033870.g ID=Lus10033870.BGIv1.0 annot-version=v1.0 ATGGCATATTTCAGACAATGCTTTCCTGGTACCTTGAAGGTTAATACAATCGAGGAACTTGCAAATGCCCTTGCTTCTCATCCTCCTTACCAAGTTCCAA TATCGAGTATTAAGATCAGGCATCTCTATTGCCAGGTCCCTCAAATGGAAGTCTTCTACAGTTTGAACGCTACTATTGTTGGGATAGTGAGAGGAATCGA TACTGTCAAAGGGTTGCTTTACATAATCACACCAGTTCCACAGAGCACTCTGGAAAATGTTGATCTACTACTGCAGGGATTCATCGAGATACCTACTTGT TTGTTGCAGGTGGGTTTTGAATGCACTGATCAGAATGAGTTTTGTTTCTCTTCAGGTCCAAGGATGCATGTCACCTTACATGTCTACAAATGTCTTGCCT ATAAGTTAAACCATCCCTCACCAACACAAGAGCATGCTCCAAGAGGCAAGAACCCTTGCGTCAAGCCGTCTTCTCTTTTGGAACTCTTTCACCGGCAACT ACCTCGACTGCCCATAGATATCCGAGCTGTTTTCCTCCACTTTCAGATCTTGTACCTGATTGGCACGGCCAAGTGCGTGCAATTCTTTGAAGCGGAGTCG TAG
AA sequence Show only first row Show all	>Lus10033870 pacid=23172761 polypeptide=Lus10033870 locus=Lus10033870.g ID=Lus10033870.BGIv1.0 annot-version=v1.0 MAYFRQCFPGTLKVNTIEELANALASHPPYQVPISSIKIRHLYCQVPQMEVFYSLNATIVGIVRGIDTVKGLLYIITPVPQSTLENVDLLLQGFIEIPTC LLQVGFECTDQNEFCFSSGPRMHVTLHVYKCLAYKLNHPSPTQEHAPRGKNPCVKPSSLLELFHRQLPRLPIDIRAVFLHFQILYLIGTAKCVQFFEAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033870 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10035416 [exp]	13.6	0.6722
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10003499 [exp]	13.6	0.5813
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10014247 [exp]	16.3	0.6349
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10026189 [exp]	49.1	0.6153
AT3G25840			Protein kinase superfamily pro...		Lus10035031 [exp]	87.7	0.5288
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	106.9	0.5527
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10006026 [exp]	108.6	0.5566
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000551 [exp]	111.4	0.5484
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10028776 [exp]	115.6	0.5268
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	131.5	0.5533

Compare expression of checked genes

Lus10033870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.