Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31320 1347 / 0 ATPARP2 poly(ADP-ribose) polymerase 2 (.1) AT4G02390 328 / 1e-99 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) AT5G22470 330 / 2e-98 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) AT3G14890 67 / 5e-11 phosphoesterase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043383 [exp] 353 / 6e-107 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10007882 [exp] 316 / 2e-95 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10019539 [exp] 304 / 1e-90 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10030363 [exp] 194 / 2e-52 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10000104 [exp] 65 / 1e-12 AT4G02390 120 / 1e-33 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10037922 [exp] 59 / 1e-08 AT3G14890 413 / 3e-139 phosphoesterase (.1.2) Lus10038650 [exp] 50 / 1e-05 AT3G14890 406 / 5e-136 phosphoesterase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041300 [exp] 1434 / 0 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Potri.009G143900 [exp] 354 / 3e-107 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.014G128200 [exp] 333 / 1e-101 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.014G128000 [exp] 268 / 2e-77 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.008G008626 [exp] 124 / 7e-30 AT2G31320 117 / 6e-28 poly(ADP-ribose) polymerase 2 (.1) Potri.004G184100 [exp] 120 / 2e-28 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.001G390500 [exp] 56 / 9e-08 AT3G14890 407 / 3e-138 phosphoesterase (.1.2) Potri.009G136501 [exp] 42 / 0.0005 AT4G02390 74 / 5e-16 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0084 [flax] [poplar] ADP-ribosyl PF00644 [flax] [poplar] PARP Poly(ADP-ribose) polymerase catalytic domain CL0084 [flax] [poplar] PF02877 [flax] [poplar] PARP_reg Poly(ADP-ribose) polymerase, regulatory domain CL0084 [flax] [poplar] PF05406 [flax] [poplar] WGR WGR domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00645 [flax] [poplar] zf-PARP Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region CL0306 [flax] [poplar] HeH PF08063 [flax] [poplar] PADR1 PADR1 (NUC008) domain
Representative CDS sequence Show only first row Show all	>Lus10033871 pacid=23172830 polypeptide=Lus10033871 locus=Lus10033871.g ID=Lus10033871.BGIv1.0 annot-version=v1.0 ATGGCGACTCCGATACCTCCCAAGCCATGGAAGGCCGAGTACGCCAAGTCCGGTCGATCATCCTGTAAGACCTGCAAGTCACCCATCGACAAGGAGAAGC TCCGCCTCGGCAAAATGGTCCAGGCCACCCAATTCGACGGTTTCATGCCTATGTGGAACCATGCTAGCTGTATTCTGAAGAAGGCCAAGCAAATAAAGTT AGTGGATGACGTTGAAGGATTAGAGTCGCTTCGGTGGGAAGATCAGCAGAAGATCAGAAAGTACGTTGAAGATGGGGGTCAGCCAAGTCAGGGTTCCTTG GTTAAAGAAGCTGCCCCTATTGGAATGGAATCTGGAATCGAAGTTTCACAAACTTCTCGTGCTACTTGTAAGATCTGCAGTGAAAAGATTATGAAAGGAG AGGTGCGCATTTCTTCCAAGCCTTTAGGGCAAGGACCTAGAGGATTGGCATGGCACCATGCCAACTGTTTCATGACTTTGCACCCATCTGTTGGAGTTGA AAAGCTGTCAGGTTTCGGAAACCTCTCATCATCTGACCAGGAAATAGTTCAGGCACTGGTCAAGGCTCAATCAGGATCTAAAAAAGATAAGGAAGTGGAA CAGCCAGTTACCAGAGCTGGCATTAAACGTAAAAAAGATGCTGGCAGTGAGGAGCCCTTTAAAGTTTCAAAAGCTGAAGGAGATATCTCAAGCAGGACTG CAAAAATAAAGACTTCAAATGACCTAGAAAGTAAATTGGAGGCTCAGTCCAAAGCGTTATGGGCTTTAAAGGATGATCTGAAAAAGCATGTGTCCACAGC TGAGCTGCGTGGGATGCTTGATGCCAATGGTCAAGATTCTACTGGTTCAGAACTTGATTTACGGGATAAATGTGCTGATGGGATGATGTTTGGAGCGCTT GGTAGTTGTCCAGCTTGCTCTGGTCCTCTTTGCTTTTCTAGAAGCATGTACCGGTGTCATGGTTACCTCTCGGCATGGAGTAAATGTTCATTCTCCACCC GCGATCCAGAGCGTCTTAACGGAAAATGGGCAATCCCTGAAGATACAGAAAATCAGTTTTTGAAGAAGTGGTTCCAAGCACAAAAGAGTGAGAAACCTGT CAGGGTGCTGCCTCCACCATCTGATAGTCCTTCCAGAGTTCAAACAGCCAAAGACCAGTTGCAGTCTTCAAAGAATGAAAACTTGGGAGATCTGAAAGTC TCCTTTTCTGGGTTAGCTAAGGAATCGGCGGAAGAATGGAAAGGTAAAATCGAAGGAGCTGGTGGACAGGTTCACAAAAAGATTAAGAAAGACACAAATT GCTTAGTGTTGAGTGGAGTGCTGGATTCAGAGAATGCTGATATAAGGAAAGCAAGGAAAATGAAATTGCCAATCGTTAGAGAAGATTACTTGGTGGACTG CTTTAAAAGACAGAAGAAGCTTCCACTTGACTTGTACAAAGTTGAAGCCATAGGCGAGGCATCTAGTTTGGTCACTGTTAAAGTAAAAGGCCGCAGTGCT GTGCATGAAGCATCTGGCTTGCAAGACACAGGCCACATTCTCGAGGATGGAGCAAGTATCTACAACACAACTTTGAACATGTCCGACTTATCAACAGGTG TTAACAGCTATTATATCCTCCAGATAATCCAAGATGACAAAGGATCTGATTGTAATGTGTTCCGGAAATGGGGTCGGGTGGGAAATGAAAAAATTGGAGG CACAAAAGTGGACGGGATGTCAAAGTCCGACGCAATTGATGAATTTAGAAGGTTATTCCTCGAGAAGACTGGTAATACATGGGATTCGTGGGAGACAAAG CAAAATTTTGAGAAAAAACCTGGAAGGTTTTTCCCATTGGACATTGATTATGGCGTGAACAAAAATGTTATTAAGAAAAGCGTTTGTAATTCTGAAAGCC AACTTGCCCCTCCCGTGGTGGAATTGATGAAGATGCTTTTCAATGTTGAAAATTACAGATCTGCTATGATGGAATTTGAAATCAATATGTCAGAGATGCC ACTAGGAAAACTGAGTTCAGACAATATCCATAAAGGTTTCGAAGCATTGACAGATATTCAAAAATTACTGAATAACAGTTCCTCTGATCCATCTGTGAGA GAAAGCTTGATGCTTGATGCAAGCAATAGATTTTTCACCATTATACCTTCCATTCATCCACATGTTATTAGAGATGAAGATGACATCAAGTCAAAGGTGA AAATGCTGGAAGCTCTTCAGGATATTGAGATTGCCTCAAGATTAGTAGGTTTTGATGCTGACAGCGATGCTTCCTTAGACGAGAAGTATAAGAGGCTTCA ATGTGATATTACTGCAATTCCTCACGAGAGTGACGATTATCGCCTGATTGAGAAGTATCTCAATAATACTCATGCCCCTACACATACGGATTGGGATCTG GAGCTTGAAGATGTTTTTACGCTGAACAGGGAAGGGGAATTTGACAAGTATGCTCCCCACAGGGAAAAGCTTCAAAACAGAATGCTTCTCTGGCATGGTT CTCGGTTAACTAACTTTGTCGGAATACTTAGCCAAGGACTTCGAATAGCTCCTCCAGAAGCTCCGGCAACTGGCTATATGTTCGGGAAAGGTATCTATTT TGCAGATCTTGTCAGCAAGAGTGCTCAGTATTGTTTCACTGATAGGAAAAATCCCGTGGGACTAATGGTTCTTAGTGAAGTCGCCTTGGGAGAGGTTTAT GAGCTGAAGAAGTCTAAGTATATGGATAAACCTCCTAAAGGAAAGCACTCTACTAAAGGTCTGGGTAAGAAGGTGCCCAAGGAATCAGAGTTCGTCAAGT GGCAGAATGACGTCACCGTCCCTTGCGGTAAACCAGTTGATTCAAATATCAAAGCCTCTGAGCTTATGTACAATGAGTACATCGTCTATAATACGGCTCA ACTGTATATGTTTTATTTGGCTAATAGCCATCCTGCATCTGGTATACTTGTATACGTCAATGCAGTCAGTGATGTTAGATGGTTCATATGGGCAGGTGAA AATGCAGTTCTTGTTAAAGGTGAGGTTTTGCCACAAGAGGTGATCACGAAGAAAGATAAAATATCTCAAGCAGGGTTAGGAACTGGGGAAACACTTCGAC TCTCAAGAAAACGAACTATTTTGTGTGTATCGTGTGGTAGATCTCATTTTGGGGTTTAG
AA sequence Show only first row Show all	>Lus10033871 pacid=23172830 polypeptide=Lus10033871 locus=Lus10033871.g ID=Lus10033871.BGIv1.0 annot-version=v1.0 MATPIPPKPWKAEYAKSGRSSCKTCKSPIDKEKLRLGKMVQATQFDGFMPMWNHASCILKKAKQIKLVDDVEGLESLRWEDQQKIRKYVEDGGQPSQGSL VKEAAPIGMESGIEVSQTSRATCKICSEKIMKGEVRISSKPLGQGPRGLAWHHANCFMTLHPSVGVEKLSGFGNLSSSDQEIVQALVKAQSGSKKDKEVE QPVTRAGIKRKKDAGSEEPFKVSKAEGDISSRTAKIKTSNDLESKLEAQSKALWALKDDLKKHVSTAELRGMLDANGQDSTGSELDLRDKCADGMMFGAL GSCPACSGPLCFSRSMYRCHGYLSAWSKCSFSTRDPERLNGKWAIPEDTENQFLKKWFQAQKSEKPVRVLPPPSDSPSRVQTAKDQLQSSKNENLGDLKV SFSGLAKESAEEWKGKIEGAGGQVHKKIKKDTNCLVLSGVLDSENADIRKARKMKLPIVREDYLVDCFKRQKKLPLDLYKVEAIGEASSLVTVKVKGRSA VHEASGLQDTGHILEDGASIYNTTLNMSDLSTGVNSYYILQIIQDDKGSDCNVFRKWGRVGNEKIGGTKVDGMSKSDAIDEFRRLFLEKTGNTWDSWETK QNFEKKPGRFFPLDIDYGVNKNVIKKSVCNSESQLAPPVVELMKMLFNVENYRSAMMEFEINMSEMPLGKLSSDNIHKGFEALTDIQKLLNNSSSDPSVR ESLMLDASNRFFTIIPSIHPHVIRDEDDIKSKVKMLEALQDIEIASRLVGFDADSDASLDEKYKRLQCDITAIPHESDDYRLIEKYLNNTHAPTHTDWDL ELEDVFTLNREGEFDKYAPHREKLQNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCFTDRKNPVGLMVLSEVALGEVY ELKKSKYMDKPPKGKHSTKGLGKKVPKESEFVKWQNDVTVPCGKPVDSNIKASELMYNEYIVYNTAQLYMFYLANSHPASGILVYVNAVSDVRWFIWAGE NAVLVKGEVLPQEVITKKDKISQAGLGTGETLRLSRKRTILCVSCGRSHFGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Lus10033871 [exp]	0	1
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	5.3	0.9269
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	6.8	0.9428
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	7.9	0.9412
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	8.8	0.9354
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	9.4	0.9343
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	9.7	0.9388
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	9.9	0.9418
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	10.5	0.9086
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	11.0	0.9236
AT5G05240			Uncharacterised conserved prot...		Lus10034236 [exp]	12.2	0.9030

Compare expression of checked genes

Lus10033871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.