Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58190 187 / 9e-60 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) AT2G42440 177 / 2e-55 AS2 Lateral organ boundaries (LOB) domain family protein (.1) AT2G31310 163 / 8e-51 AS2 LBD14 LOB domain-containing protein 14 (.1) AT2G42430 152 / 6e-46 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) AT3G03760 143 / 7e-42 AS2 LBD20 LOB domain-containing protein 20 (.1) AT4G00210 137 / 2e-40 AS2 LBD31 LOB domain-containing protein 31 (.1) AT5G06080 136 / 3e-40 AS2 LBD33 LOB domain-containing protein 33 (.1) AT2G45420 135 / 8e-39 AS2 LBD18, ASL20 LOB domain-containing protein 18 (.1) AT4G00220 131 / 7e-38 AS2 JLO, LBD30, ASL19 LOB DOMAIN-CONTAINING PROTEIN 30, JAGGED LATERAL ORGANS, Lateral organ boundaries (LOB) domain family protein (.1) AT2G45410 122 / 1e-34 AS2 LBD19 LOB domain-containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000613 [exp] 306 / 2e-106 AT3G58190 215 / 1e-70 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10033872 [exp] 157 / 9e-48 AT2G42430 212 / 6e-69 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10024877 [exp] 155 / 2e-46 AT2G42430 211 / 6e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10000707 [exp] 153 / 8e-46 AT2G42430 222 / 2e-72 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10014757 [exp] 150 / 9e-45 AT2G42430 208 / 2e-67 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10004707 [exp] 132 / 1e-38 AT5G06080 154 / 1e-47 LOB domain-containing protein 33 (.1) Lus10009298 [exp] 121 / 1e-33 AT2G45410 193 / 2e-62 LOB domain-containing protein 19 (.1) Lus10016769 [exp] 115 / 5e-31 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10022463 [exp] 114 / 1e-30 AT5G66870 221 / 8e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041100 [exp] 225 / 8e-75 AT2G42440 186 / 6e-59 Lateral organ boundaries (LOB) domain family protein (.1) Potri.005G221900 [exp] 161 / 1e-49 AT2G42430 209 / 3e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.002G041200 [exp] 159 / 1e-48 AT2G42430 191 / 6e-61 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.010G200400 [exp] 154 / 7e-47 AT5G06080 152 / 8e-47 LOB domain-containing protein 33 (.1) Potri.014G070400 [exp] 147 / 9e-44 AT2G45420 237 / 2e-78 LOB domain-containing protein 18 (.1) Potri.002G149000 [exp] 145 / 5e-43 AT2G45420 234 / 2e-77 LOB domain-containing protein 18 (.1) Potri.013G064501 [exp] 142 / 6e-42 AT3G03760 209 / 1e-67 LOB domain-containing protein 20 (.1) Potri.014G070300 [exp] 133 / 3e-39 AT4G00210 181 / 5e-58 LOB domain-containing protein 31 (.1) Potri.002G148900 [exp] 131 / 6e-38 AT4G00210 186 / 2e-59 LOB domain-containing protein 31 (.1) Potri.005G134900 [exp] 112 / 9e-30 AT5G66870 254 / 8e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10033873 pacid=23172840 polypeptide=Lus10033873 locus=Lus10033873.g ID=Lus10033873.BGIv1.0 annot-version=v1.0 ATGACAGGGAGTGGTTCACCATGTGGAGCCTGCAAGTTCTTGAGGAGGAAATGTGTGAGGGGGTGTGTGTTTGCACCTTACTTCTGCCATGAACAAGGTG CTACCCATTTTGCAGCCATCCACAAGGTTTTTGGTGCTAGCAATGTCTCCAAATTGCTTGCTCACTTGCCCGTCTCCAATCGTTGCGAGGCAGCCGTTAC CATCTCTTATGAAGCTCAGGCCAGGCTCCAGGACCCCATCTATGGTTGTGTCTCCCACATCTTTGCTCTCCAGCAACAGGTTGTGAATTTACAGGCTCAG CTAGCTTCTCTAAAGGAACAAGCTGGACAGAGCTTTGTTTACAACTCTGGTTACCCATCAGCAAACCCTAGTAATGGAAGATATACCTCAACATCAACTC CAATGCAAGATCTACAGAACTGGCTTCATCAACAATATCCGCAACAGATACCAAACAACAACAACATGACATATAACGAAAACAACAACAACAACAACAA CAACATGGGAGGTATGTACATGGAGAACTATGGAACTTCGAGCAACAACTCATTCGACAGCTTCGAGGATGCCTCGAATTCCATGGACATGAATCAAACC GACAGGAAATGGGCTACTTCTTCTGCTGATGATCTTCAATCAGTTGCTTTTGGTTACTATCATCACTAG
AA sequence Show only first row Show all	>Lus10033873 pacid=23172840 polypeptide=Lus10033873 locus=Lus10033873.g ID=Lus10033873.BGIv1.0 annot-version=v1.0 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSNRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQ LASLKEQAGQSFVYNSGYPSANPSNGRYTSTSTPMQDLQNWLHQQYPQQIPNNNNMTYNENNNNNNNNMGGMYMENYGTSSNNSFDSFEDASNSMDMNQT DRKWATSSADDLQSVAFGYYHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10033873 [exp]	0	1
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	1.0	0.9218
					Lus10042766 [exp]	4.0	0.8953
					Lus10008034 [exp]	6.1	0.8538
					Lus10039776 [exp]	7.4	0.8471
AT1G22990		HIPP22	heavy metal associated isopren...		Lus10036004 [exp]	12.9	0.8412
AT5G51680			hydroxyproline-rich glycoprote...		Lus10015024 [exp]	13.5	0.8891
AT3G25160			ER lumen protein retaining rec...		Lus10022763 [exp]	18.8	0.8777
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	23.5	0.8340
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	28.0	0.8817
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	29.5	0.8833

Compare expression of checked genes

Lus10033873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.