Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024215 [exp] 573 / 0 ND / Lus10039674 [exp] 559 / 0 ND / Lus10002071 [exp] 559 / 0 ND / Lus10010826 [exp] 556 / 0 ND / Lus10015042 [exp] 555 / 0 ND / Lus10010604 [exp] 554 / 0 ND / Lus10015582 [exp] 551 / 0 ND / Lus10003781 [exp] 542 / 0 ND / Lus10021684 [exp] 525 / 0 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033874 pacid=23172764 polypeptide=Lus10033874 locus=Lus10033874.g ID=Lus10033874.BGIv1.0 annot-version=v1.0 ATGCGCAGCTGTGAACATCACGCTGTCTTCCTTGAATCCTTTGCTAATCGTCCTGTTCTTCCTACTGTTCATGTCGATCACACTGCCTTCGATCGGTATG GTCTCAACCCGTCTGCTCTCATCGGCAATTTAGGATGGGGCTCTTTAACTCTCCATCAGCGCTACCATTATTTTCCCGCTGCTATTCGTCAATTTTATGC CAATCTGCAATTAGAAGGGTCTCTTCAAAATGGACGATTCAGCACCATTGTAGCTGGATATCGTATCATTGTGACCCCTCAACTTCTCTCCTCAGTCTTG GGTGTTCCCTCAGGAGGTATGGTGATCTTTGATGAATCTGATCTTCGCAAAGTTCCCTTTGATGCGTCAGTCGTTCTGGCTCGTTGGACTAACGCTCCTC CAACAACTCGTCCTCTCTCTATCATCTCAATGCTTCCTGATTACCTCAAAGTTTACCTCAAAATTTTGCACTTCTTTATTTCAAGGGTCTTCCTTCCTCG CTCCGTTGGCAAATTTCTTGTCACTAATCTGGACACCTGGATCATGCACTGTGCTATTTTCAATTTTCAAACTGATTTCAGCTGCTTGATGTTTGGTACA ATGGTTTCCTACGGCAATCGATCCTTTCCTGGTGATCTTCCATTCGGGCCTGCAATTTCCTATATGCTCTATGCACTTAGCATTCCAGTTCACGGGAGCC TTCTAATTGAATCTCCTCTGCACAATCTTCGTCCTAGCCATGTTCTCCGGGAAGTTGGATGGGATCACCTACAGCCTGCCTCTGGCTCAGGGGGAGAAGC TCTCCACGATCTTAACTTCTCCGATGATGAGGTTGATGATCTTGCTGCTGAGATGGAAAGAAATTTAGAGATCCATAGTAGTCTTGATGCTGCCATTGCT GATAATTTGTCTTTGCCTAGTCACTCTCCTAATAGTACTTGA
AA sequence Show only first row Show all	>Lus10033874 pacid=23172764 polypeptide=Lus10033874 locus=Lus10033874.g ID=Lus10033874.BGIv1.0 annot-version=v1.0 MRSCEHHAVFLESFANRPVLPTVHVDHTAFDRYGLNPSALIGNLGWGSLTLHQRYHYFPAAIRQFYANLQLEGSLQNGRFSTIVAGYRIIVTPQLLSSVL GVPSGGMVIFDESDLRKVPFDASVVLARWTNAPPTTRPLSIISMLPDYLKVYLKILHFFISRVFLPRSVGKFLVTNLDTWIMHCAIFNFQTDFSCLMFGT MVSYGNRSFPGDLPFGPAISYMLYALSIPVHGSLLIESPLHNLRPSHVLREVGWDHLQPASGSGGEALHDLNFSDDEVDDLAAEMERNLEIHSSLDAAIA DNLSLPSHSPNST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033874 [exp]	0	1
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	2.0	0.8459
					Lus10012326 [exp]	2.2	0.7664
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023452 [exp]	2.4	0.8246
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	2.8	0.8412
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009417 [exp]	8.8	0.7492
AT2G25270			unknown protein		Lus10014341 [exp]	10.0	0.7668
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10000008 [exp]	15.0	0.7312
					Lus10001123 [exp]	15.8	0.7312
					Lus10023352 [exp]	16.6	0.7312
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	17.3	0.7312

Compare expression of checked genes

Lus10033874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.