Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 223 / 3e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 218 / 2e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 218 / 2e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04380 217 / 4e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 217 / 9e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43450 214 / 7e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 210 / 4e-66 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G43440 208 / 1e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G03410 208 / 3e-65 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03400 204 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000611 [exp] 352 / 3e-120 AT1G06620 250 / 7e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000612 [exp] 294 / 4e-99 AT5G59540 337 / 2e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10033879 [exp] 276 / 6e-92 AT5G59540 312 / 8e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10033878 [exp] 283 / 8e-92 AT5G59540 308 / 4e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10027586 [exp] 221 / 3e-70 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022189 [exp] 218 / 2e-69 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 217 / 9e-69 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 216 / 2e-68 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017080 [exp] 209 / 7e-66 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222300 [exp] 307 / 4e-104 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 288 / 3e-96 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 283 / 1e-94 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 277 / 2e-92 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 234 / 2e-75 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G083100 [exp] 233 / 4e-75 AT1G04350 287 / 5e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 232 / 1e-74 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 223 / 3e-71 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073166 [exp] 216 / 1e-68 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 213 / 3e-67 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10033877 pacid=23172743 polypeptide=Lus10033877 locus=Lus10033877.g ID=Lus10033877.BGIv1.0 annot-version=v1.0 ATGGATGGGCTGCTGACAGATAGTCGGAGGTTCCACGAGCTGCCTGGTGAGGAGAAGATGGAGTATTATTCACGTGATCGCTCGCGGCCGGTGAGGTACG TCAGCAATGGCACACTGCTGACGAGGACGGCGGGGCCTGCTGACTGGAGAGACACGCTGTCTGTCAAAGCTCCCGACGGTCAACTCGACCCTCAATTCTG CCCTCCTGTATGCAGGAAAGCAGTAACCGATTACTTACAGCAAGTAACAACACTAAATAAGAAGCTATCAGAGCTACTTTCACAAGCTGCAGGGCTAAGT CGGGACTACTTATCAAGCATCAAATGCATGGAATCAATAGCAATGGTGTGCCATTACTACCCAACTTGTCCCCAGCCCGACCTAACCCTAGGCGTCTCGA AGCACACCGATCCATATTTTCTCACCATACTCCTTCAAGACTCTACAGGAGGACTCCAAGTCCTCAATCCAAACAACCGCCGATGGGTCGATATGCCTGC CCCGCGCGGGACCCTGGTGGTGAATATTGGGGATTTCATGCAGCTCATCACCAATGACAAGTTCAAGAGCGTCGAACATCGGGTCAAAGCTTGGAGCTCC AAGACCCGTTCTTCAATTGCTTGCTTCTTCTCACCGAGCTCCGAGAACATTTCGAAACCTTACAGTCCTGCAGAGGAGATTATCTCTAAGGAGAATACAC CGGTTTATAGAGCCACACATCTCGCTGAATTTCTGAAATGTTTTAGGTCACATGGCTCCGCACTTTCCCACTTCAGATTGTGCCCGCCCAAGTCCTGA
AA sequence Show only first row Show all	>Lus10033877 pacid=23172743 polypeptide=Lus10033877 locus=Lus10033877.g ID=Lus10033877.BGIv1.0 annot-version=v1.0 MDGLLTDSRRFHELPGEEKMEYYSRDRSRPVRYVSNGTLLTRTAGPADWRDTLSVKAPDGQLDPQFCPPVCRKAVTDYLQQVTTLNKKLSELLSQAAGLS RDYLSSIKCMESIAMVCHYYPTCPQPDLTLGVSKHTDPYFLTILLQDSTGGLQVLNPNNRRWVDMPAPRGTLVVNIGDFMQLITNDKFKSVEHRVKAWSS KTRSSIACFFSPSSENISKPYSPAEEIISKENTPVYRATHLAEFLKCFRSHGSALSHFRLCPPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10033877 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10026707 [exp]	1.0	0.9332
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029812 [exp]	2.4	0.7249
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	6.8	0.7367
					Lus10014737 [exp]	9.8	0.7184
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	11.0	0.7184
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	12.0	0.7184
					Lus10019558 [exp]	13.0	0.7184
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	13.9	0.7184
					Lus10021773 [exp]	14.7	0.7184
AT1G04560			AWPM-19-like family protein (....		Lus10033541 [exp]	14.9	0.6855

Compare expression of checked genes

Lus10033877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.