Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59540 308 / 6e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06620 296 / 2e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 296 / 2e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 295 / 3e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 294 / 1e-94 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 289 / 9e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 283 / 1e-90 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 283 / 2e-90 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G03410 278 / 4e-88 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 275 / 2e-87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033879 [exp] 602 / 0 AT5G59540 312 / 8e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10000612 [exp] 570 / 0 AT5G59540 337 / 2e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10000611 [exp] 324 / 1e-104 AT1G06620 250 / 7e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 302 / 2e-97 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 295 / 5e-95 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 295 / 1e-94 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 291 / 2e-93 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 289 / 1e-92 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017080 [exp] 289 / 1e-92 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222300 [exp] 411 / 6e-140 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 386 / 3e-130 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 377 / 2e-126 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 355 / 4e-118 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G083100 [exp] 335 / 2e-110 AT1G04350 287 / 5e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 312 / 1e-101 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073166 [exp] 300 / 5e-97 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 300 / 1e-96 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 295 / 5e-95 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 290 / 6e-93 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10033878 pacid=23172850 polypeptide=Lus10033878 locus=Lus10033878.g ID=Lus10033878.BGIv1.0 annot-version=v1.0 ATGGAACTCCCTCCCAAAACTACAAGTTACGACGTCGTTTATGACAAAACGCAAGACGTAAAAGCGTTCGACGAAACGAAATCTGGTGTTAAAGGACTAG TGGATTCTGGTATCACCACAATCCCTAGGTTCTTCATCCGCCACAACCTATCGAGCTCGCCAACCTCACCTGCCACATCATACCTCCTCCGCCCTCCCAT GATAGACATGTCGAGAGGGCGAGAGGCGGTGGTCGGAGAGATTCGTGTGGCAGCGGAGACATGGGGTATGTTCCAGCTGGTCAACCATGACATCCCAATA AGTGTGATGGAGGAAATGTTGGACGCCGTGAGCCGATTCCATGAGCAACCGGGGGACGCAAAGGCGGAGTTGTACTCTCACGATCGTGGAAGAAAGGTTA GGTTCGTCAGCAATGGGGATTTTCTGGTGAATAAGTCACCCGCAGATTGGATGGATACACTAGCCTTTGATTTCCAGGATGGTTATCTTGACCCTCAATT CTTCCCTCAAGTTTGTAGAGAAGCGGTCGAAGCATATGTGGAAAATGTAATCAACCTGAAAAAGTTGTTGTCGGAACTTGTTTCGGAAGCCGCAGGACTT CCTAATGAGTACCTATCAAGCATCAAGTGCATGGAATCAATGGTGTTTGCATGCCACTATTACCCTCGTTGTCCTCAACCGCACCTAACTCTGGGTGCCA CAAACCATACAGACCGTTATTCTCTCACCATTCTGTTACAAGACCATATAGGTGGCCTTCAAGTTTTGCATCAGGATCAATGGGTCAACGTAACTCCTCT ACTTGGAGCTCTTGTTGTTAACATTGGAGACTTCATGCAGTTGATTACAAATGACAAATTCAAGAGTGCGGAGCACAGAGTCATTGTTGGGGATAAGAAG AGGGCATCTGTGGCAAGCTTTTTCTATCCAAACTCTTCCAATAAACTCAAACTTTACGGGCCTCTCGATGAGCTTCTTTCCGATAGAAGTCCACCAATCT ACATGAATACTAGTTTTACTGAATTTATGGCACATTTCAGGAATGAACTCACTAGGGAGGAAGAGAAGAGAAGAGAAGAGAAGGAGAAAGCAAGAGTAAA TAATGAATGGAGGACTTGCCCTCATCTAAGACATGATATCGTAGAGCTGGCTCTTCGTCATCCCGGCGAAGTCTGCCGGCAGGCGGGGTTCGGCTTTCTC GCCATCGCTTTCTTCGATACGATTGGGACTCGACAACAAAAGGGATTTGATAGAGAAATAATTTTCGGCTCGATATTCGGGTTTATTGACCCTATATATA AGAAAAATTGCCTTATTTCCTCTCATAAAAAAGAAGGGACCTCTCCCCAAAACCCTAGTCGTTGCCACGTACTCACCACAGCCACCACGGCCTCCCTACA CTCGTGTGCTTCCAACGACGCAATCATCAGCAACGTCTCGAGCACCGCCAACGTCGTCATCACCACCAACGTCGTCGTCGTCCCCAATGTCTCCAGCATC GCCACCCCCACTATTACTGCCAACGTCGTCATCGCCACCAACGTCACCATTGTTACTGTTGCTATGCTGATTACCACTCCGTTGTTACACCTCTACCCCC TTCCAAGAAGCACGACCAGGACATCATCCTGCATCACCGGCCAGTCAGTCAAGGACGACCGGTCCGGTTCACTGAGTTTGAGTGTTGGAGCGACTAAGGT GCTAGCCTCCTTTAGCAATTCAAATAGGGATGTTGATAATCGCATCCAAGTTTGCTAG
AA sequence Show only first row Show all	>Lus10033878 pacid=23172850 polypeptide=Lus10033878 locus=Lus10033878.g ID=Lus10033878.BGIv1.0 annot-version=v1.0 MELPPKTTSYDVVYDKTQDVKAFDETKSGVKGLVDSGITTIPRFFIRHNLSSSPTSPATSYLLRPPMIDMSRGREAVVGEIRVAAETWGMFQLVNHDIPI SVMEEMLDAVSRFHEQPGDAKAELYSHDRGRKVRFVSNGDFLVNKSPADWMDTLAFDFQDGYLDPQFFPQVCREAVEAYVENVINLKKLLSELVSEAAGL PNEYLSSIKCMESMVFACHYYPRCPQPHLTLGATNHTDRYSLTILLQDHIGGLQVLHQDQWVNVTPLLGALVVNIGDFMQLITNDKFKSAEHRVIVGDKK RASVASFFYPNSSNKLKLYGPLDELLSDRSPPIYMNTSFTEFMAHFRNELTREEEKRREEKEKARVNNEWRTCPHLRHDIVELALRHPGEVCRQAGFGFL AIAFFDTIGTRQQKGFDREIIFGSIFGFIDPIYKKNCLISSHKKEGTSPQNPSRCHVLTTATTASLHSCASNDAIISNVSSTANVVITTNVVVVPNVSSI ATPTITANVVIATNVTIVTVAMLITTPLLHLYPLPRSTTRTSSCITGQSVKDDRSGSLSLSVGATKVLASFSNSNRDVDNRIQVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10033878 [exp]	0	1

Compare expression of checked genes

Lus10033878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.