Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31260 940 / 0 ATAPG9, APG9 autophagy 9 (APG9) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003567 [exp] 1499 / 0 AT2G31260 1093 / 0.0 autophagy 9 (APG9) (.1) Lus10024880 [exp] 959 / 0 AT2G31260 900 / 0.0 autophagy 9 (APG9) (.1) Lus10000709 [exp] 567 / 0 AT2G31260 477 / 2e-160 autophagy 9 (APG9) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039900 [exp] 1088 / 0 AT2G31260 1021 / 0.0 autophagy 9 (APG9) (.1) Potri.005G222800 [exp] 1065 / 0 AT2G31260 952 / 0.0 autophagy 9 (APG9) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04109 [flax] [poplar] APG9 Autophagy protein Apg9
Representative CDS sequence Show only first row Show all	>Lus10033881 pacid=23172793 polypeptide=Lus10033881 locus=Lus10033881.g ID=Lus10033881.BGIv1.0 annot-version=v1.0 ATGATGTTCGGTGGGCAGACAAGTTCCAATGCCCTCAGGAAATTTGATTGGAGATGGCACGATGACTCTACTTTAACAACAGGCTTGCTTAAGGATGTGG CACCAGAAGTTGAATTGTCTGGTTATGGAAGGATACCAAGTCCTGGAAGTGAAAGCCCTTCTGGGCTTCTTAATGGTGAAAGCTTGAACGTTCAGCCAAT AGCTGATCTGGACTTGTTCTTTGAAAGGGTTTACAGTTACTACTGTGAGAAAGGGCTTTGGTGCATTATTATAAAATGGGTAGTTGAGCTTTTGAGCCTT GGTTTCACCATCTGTTTCTCTGGGTTTTTCTTACTCTATGTTGACTGGAATGGTCTACGTAACGCTAAGTGTGGGATGGATGCAGTTGAATCTGGAACCA AGCCTTGTGATCTTGCAAAAGAAGCTCTTCACGAGCAACCAGCCGGTTTTTACAAGGAGATTCAAACTATGCCATGGGCGACTGTCCTTGAAAAGGTTAT TCAACTGCAAAGGTCACAGCAACTCTGCGTGGTGAAAGACCTATCAGCTCATGATATCGTCATGCGACTGATGCGGAAAGAAAACTACTTGATTGGAATG ATCAACAAAGGGATTCTTGCATTCCCTATATCACCATGGGTTCCAGGTGCTGGACCAACTGTCAAATCTGACTCATATGGAACCCAACGTCGCTTGATTC TAACAAAGACTCTTGAATGGACCTTAAATTGGTGCATACTGCAGAGCATGTTTGATAGAAACTTTTGTGTTAAGATGGACTTCGTTGCAAATCCTAACGC ACTGAGAAAACGACTCATGGTTGTTGGGATCGCAATGCTTGTACTTTCGCCATTTCTAGTTATTTTCATGTTAGTGTATCTATTCCTACGACACGCTGAA CAGTTCTACAACCATCCCAGCACAGCATCATCTCGAAGGTGGTCAAATTTGTCTCGGTGGATTTTCAGAGAATTCAATGAGGTTGACCATTTGTTCAAGC ATCGAATCAACAGCAGTATAGTGCATGCTTCAGATTATCTTAAACAGTTCCCATCACCTAAAATTTCAATCATTGCAAAGTTTATCTCTTTCGTTTCTGG AGGATTTGCTGCTGTCCTGCTGATCATTGCATTTGTGGAGGAATCCTTACTAGAGGGCCATATCTTTGGACGCAACTTGTTTTGGTATGCTGCTGTATTT GGAACTATAACAGCTATCAGCCGGGCAGCAGTGACGGATGATCTTCTCGTTCTCGATCCAGAAGGAGCAATGTCAGGGGTGGTACAGCAAACACACTATA TGCCAAAGAGGTGGCGAAGCAACGAGCATACTGAAAGTGTTAGAATAGAGTTCGAGACCCTATTTCAGTATACTGGTATGATGTTAATTGAGGAGATGGC ATCTATATTCCTCACACCACTCCTGCTTTTATTTGTTGTACCGAAGCGAGTTGATGACATCTTGGAATTCATAGCAGATTTCACAGTGGATGTGGAAGGT GTTGGCCACGTTTGTAGTTTTAGTGCCTTTGAATTTCTAAAGCATGGCAATAGCAATTATGGTTCGCCCTGTAATGTAGCTCGCACTCAAAGGAGCTCTC AGGGGAAGATGGAAAAATCAATGTTGAGTTTCAAGAGTAGCTATCCTTCGTGGGAACCAAATGCTCAAGGGAAGCAGTTCCTTCTAAATCTTCGCAATTT CAGGGAGCAGAAGTTGCAAGGACCTGGAATTAGACATAATATGTATCACCACCAGCACCAAATGTTGCGTGGAAGCCCCCTAAGCTTGAGAAGCGGTGGA GAGAGAAACACCAACTTCTCGAGGGGCACACCATATAATACTCCTGGATTCCAGTTCGACTCCTTATGGTTGATCGACGTGGATCAAAAGAGTCACCATC CGTATCTTCTGGACTGGTACTATAATACTTCTCGACCACGGGATGATACAAGAAGAGAAGAACACATTGTACAACTTGAAGCCAACGACCACCAAACCGA AGACTTTTGGAACCCGTCCAATTTGGCACGGGGAGATGCAAGGTACGACGATGATGACTACTGGGGTGGTCAGCATTTCAACGACGATCGACCCGACTCC CATATGCAGGCTTCAACATCTGCTCCATTCTTCCGGGAGAGTGTGATCCGGCATCAAGATTCGACCCACATCGATGTCCATCCTAGTGGAAGCCATTGGT GGTCCAGAAGCAACTTGCGTGGACCGCAGCCCCAGGCAAGTTTCCTCGAGCCACCAGATTTCAACAACCGATACACTCCTGCAGGTAATTACTTGGATGA GAACATATCAGAAAGAAGCCTGGAGGAGGAACACGAATACGATCTGGACCGAAGGAACTCCCGTAGTCTGTCGAGGACTGGTTACATGTACGATGATGAC ACGGAAGGTGGAGGAGGGAACTTGAGTCTCCATTTCGACGACGTATATGGCGGCAGACGTGAAACCGAAACGATAAATGAAGATGATGAAGAAGACCCAC CTAGCAGTTTCTGA
AA sequence Show only first row Show all	>Lus10033881 pacid=23172793 polypeptide=Lus10033881 locus=Lus10033881.g ID=Lus10033881.BGIv1.0 annot-version=v1.0 MMFGGQTSSNALRKFDWRWHDDSTLTTGLLKDVAPEVELSGYGRIPSPGSESPSGLLNGESLNVQPIADLDLFFERVYSYYCEKGLWCIIIKWVVELLSL GFTICFSGFFLLYVDWNGLRNAKCGMDAVESGTKPCDLAKEALHEQPAGFYKEIQTMPWATVLEKVIQLQRSQQLCVVKDLSAHDIVMRLMRKENYLIGM INKGILAFPISPWVPGAGPTVKSDSYGTQRRLILTKTLEWTLNWCILQSMFDRNFCVKMDFVANPNALRKRLMVVGIAMLVLSPFLVIFMLVYLFLRHAE QFYNHPSTASSRRWSNLSRWIFREFNEVDHLFKHRINSSIVHASDYLKQFPSPKISIIAKFISFVSGGFAAVLLIIAFVEESLLEGHIFGRNLFWYAAVF GTITAISRAAVTDDLLVLDPEGAMSGVVQQTHYMPKRWRSNEHTESVRIEFETLFQYTGMMLIEEMASIFLTPLLLLFVVPKRVDDILEFIADFTVDVEG VGHVCSFSAFEFLKHGNSNYGSPCNVARTQRSSQGKMEKSMLSFKSSYPSWEPNAQGKQFLLNLRNFREQKLQGPGIRHNMYHHQHQMLRGSPLSLRSGG ERNTNFSRGTPYNTPGFQFDSLWLIDVDQKSHHPYLLDWYYNTSRPRDDTRREEHIVQLEANDHQTEDFWNPSNLARGDARYDDDDYWGGQHFNDDRPDS HMQASTSAPFFRESVIRHQDSTHIDVHPSGSHWWSRSNLRGPQPQASFLEPPDFNNRYTPAGNYLDENISERSLEEEHEYDLDRRNSRSLSRTGYMYDDD TEGGGGNLSLHFDDVYGGRRETETINEDDEEDPPSSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10033881 [exp]	0	1
AT5G66810			unknown protein		Lus10016766 [exp]	5.0	0.9240
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	6.1	0.9418
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	7.1	0.9380
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	7.3	0.9324
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10000663 [exp]	8.1	0.9093
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10033528 [exp]	10.0	0.9148
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10019458 [exp]	10.2	0.9353
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	12.4	0.9335
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	12.5	0.9391
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	18.4	0.9263

Compare expression of checked genes

Lus10033881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.