Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31240 733 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G27960 154 / 2e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27500 147 / 3e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G10840 139 / 2e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G11540 44 / 0.0005 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003563 [exp] 1218 / 0 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017304 [exp] 150 / 2e-38 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003201 [exp] 150 / 4e-38 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10008786 [exp] 145 / 4e-36 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002376 [exp] 142 / 4e-35 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022231 [exp] 142 / 4e-35 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 136 / 3e-33 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222900 [exp] 804 / 0 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G039801 [exp] 150 / 4e-42 AT2G31240 148 / 3e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080100 [exp] 150 / 5e-38 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G087800 [exp] 145 / 1e-36 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G075300 [exp] 143 / 1e-35 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G100400 [exp] 134 / 6e-33 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G173400 [exp] 134 / 7e-33 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G094700 [exp] 135 / 8e-33 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G143200 [exp] 125 / 4e-30 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033883 pacid=23172831 polypeptide=Lus10033883 locus=Lus10033883.g ID=Lus10033883.BGIv1.0 annot-version=v1.0 ATGAAGAGATTTTCGATTTCACTTCTCTCCAGGCTCACTCGCCCAAATTCCAAAACTTCATTTCCCCCTCTGCTCACCAGAGAGTACCACCATGTCTCCG ACTACCCATCATCATCATTATCTCCTTCATCTCTCCACTCCACATCATCTAGCAATCTCAATAAACCCTGCGCCAGAACCCAAGCTCTTTTCATCAAACC CCGCTTCTTATCCGCCGACCCATCTCAGAACACCCTAGTCGAGATCCCACCGCCGCTGAGGCAAAGGAAATTACGCGAAAAATCACAGCTCGAGGATGCG CTGGAGTCCGCCGAGACAACCAAGGAAATGCTCAGGATTTTCCAACAGATGGAGGCTTCTTTCCACGAGCGAGAGCTTGCGTTGCCGGCTTTGAAAGTCG GGCTTCAACTCGATCGGGACCAAAATGTTGACCCTCAAAACACCCTAGCTTTCGCTACTAAGGCTTTACAACTTCTCGATAGAGATGATGACAACAGCAT TAATAGTAAGATCAACTCCTTTTACGTTTCCATGGCGTTACAGTTGATTGGTTCCGTATGTTACAGATTGAAAAGGTTTAGTGATAGTTTAGGGTACTTG AGTAGAGCTAATAGGATGTTGGTTGTGTTGGAAGAAGATGGGAATGCTGATAAAATTGAGGACATCTTGCCCTTAAGGCACGCAGTCCTTGCCGAATTGG CCAATGTTAAGACCGCAATTGGGCGGAGAGAAGAAGCTCTTGAGAATTTGAGAACTTGCTTAGATATCAAAGGAGTGATCTTGGACAAGGATGGTAAAGA ATTCGGTGTTGCGAATAGGGATTTGGCAGATGCTTATGTTGCAGTGTTGAATTTCAAGGAGGCATTATCGTTTGCAATGAAAGCGCTGGAGATACATTTG AATGGATTGGGGAATAATTCGGTCGAGGTTGCACACGATAGGAGGCTTCTCGGTGTGATTTACAGTGGACTGGAGGAGCACGAGAAGGCTCTCGAGCAGA ACGAGCTCTCGCAGAAGGTTCTTCGGAATTGGGGGCTTAGTGCTGATCTGTTGCGTGCGGAGATCGATGCTGCGAATATGCAGATTGCGTTGGGGAAGTT TGACGAGGCGATTGGGACGCTGAAGGGTATAGTGCAGCAGACTGAGAAAGACAGCGAGAATCGCGCGTTGGTGTTTATCTCGATGGCGAAGGCTCTATCT AGTCAGGAGAAATTCGCAGATGCGAAGAAGTGTCTCGAAATTTCACGCGGAGTTCTCGAGAAAAAGGAGAAGGTTTCTCCGGTCGAAGTTGCGGAGGCGT ACTCGGAGATAGCTATGCAGTATGAGAACATGAACGAGTTCGAAAACGCTATATCTTTGTTGAAAAAGACGCTCTCTTTAGTCGAGAAGCTCCCGCAGGA GCAGCATTCGGAAGGGAGCATCTCTGCTCGAATCGGATGGTTACTGATGTTGACCGGCAGGGTGACTCAAGCAATTCCTTTCTTGGAGAGTGCTGCTGAG CGATTGAAAGAGAGCTTTGGCCCCAAGCATTTCGGAGTGGGATATATCTACAACAACTTGGGTTCAGCATACTTGGAGCTGGATCGGCCACAGTCAGCTG CACAGATGTTTGCAGTTGCCAAGGACATAATGGATTCAGCGCTCGGCCCGCATCATGCAGATTCCATAGAGTCATGCCAGAACCTCTCAAAAGCCTATGC TGCAATGAAGAACTATGGCCTCGCGATCGAATTCCAGCAGCGAGTGGTTGATGCATGGGAGAGCCATGGAGCCAATGCAAAGGATGAACTGGAGGAAACT CGTAAACAGTTGGAGCAATTGGAAAAGAAGGCTCTTACTCAGTCCTCCATGGAGCAACGCCATAGAAAGGCCTTACCCTTGCCTCAGAGGACTCCTTCTG ATGGAAATTTGCAGCTCCAATTCCCCAAAAATGTAGCTTGA
AA sequence Show only first row Show all	>Lus10033883 pacid=23172831 polypeptide=Lus10033883 locus=Lus10033883.g ID=Lus10033883.BGIv1.0 annot-version=v1.0 MKRFSISLLSRLTRPNSKTSFPPLLTREYHHVSDYPSSSLSPSSLHSTSSSNLNKPCARTQALFIKPRFLSADPSQNTLVEIPPPLRQRKLREKSQLEDA LESAETTKEMLRIFQQMEASFHERELALPALKVGLQLDRDQNVDPQNTLAFATKALQLLDRDDDNSINSKINSFYVSMALQLIGSVCYRLKRFSDSLGYL SRANRMLVVLEEDGNADKIEDILPLRHAVLAELANVKTAIGRREEALENLRTCLDIKGVILDKDGKEFGVANRDLADAYVAVLNFKEALSFAMKALEIHL NGLGNNSVEVAHDRRLLGVIYSGLEEHEKALEQNELSQKVLRNWGLSADLLRAEIDAANMQIALGKFDEAIGTLKGIVQQTEKDSENRALVFISMAKALS SQEKFADAKKCLEISRGVLEKKEKVSPVEVAEAYSEIAMQYENMNEFENAISLLKKTLSLVEKLPQEQHSEGSISARIGWLLMLTGRVTQAIPFLESAAE RLKESFGPKHFGVGYIYNNLGSAYLELDRPQSAAQMFAVAKDIMDSALGPHHADSIESCQNLSKAYAAMKNYGLAIEFQQRVVDAWESHGANAKDELEET RKQLEQLEKKALTQSSMEQRHRKALPLPQRTPSDGNLQLQFPKNVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	0	1
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	1.7	0.9194
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	3.2	0.9234
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	3.2	0.9213
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	5.0	0.9034
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041326 [exp]	7.0	0.8931
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	7.2	0.9058
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	9.5	0.8937
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	10.4	0.8393
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	13.1	0.8918
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10004640 [exp]	14.5	0.8766

Compare expression of checked genes

Lus10033883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.