Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14385 135 / 2e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003559 [exp] 245 / 3e-81 AT4G14385 154 / 2e-48 unknown protein Lus10021187 [exp] 159 / 1e-47 AT4G14385 174 / 1e-56 unknown protein Lus10011821 [exp] 143 / 1e-41 AT4G14385 172 / 8e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038700 [exp] 208 / 5e-67 AT4G14385 168 / 4e-54 unknown protein Potri.005G223900 [exp] 206 / 3e-66 AT4G14385 166 / 2e-53 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09340 [flax] [poplar] NuA4 Histone acetyltransferase subunit NuA4
Representative CDS sequence Show only first row Show all	>Lus10033887 pacid=23172807 polypeptide=Lus10033887 locus=Lus10033887.g ID=Lus10033887.BGIv1.0 annot-version=v1.0 ATGCTGGTCCGTCCGGTTGGTCAGCGAGGAGCCTCAGCAAATCCCTCCGCGATCATCAGTGCCCTTCTCAGCAAGAGAGCCAAGCTCCACGAAGAGCTAC GAACCATTGAAAAACAGGTGTATGATATGGAGACAAACTACTTGCAGGATCCGAGCCAGTGTGGCAATGTAGTGAAAGGTTTCGAAGGATTCTTATCTTC AACTAAGAACACTGCACTCTTGAAGCGGTCTAGGAAGTTTCAACCAGAAGATAGACTGTTCTCATTATCTTCAGTTACCTCACCAGCTGTATGTACCCTT TCAACTCAAACTGTCACTTTCTATAGCTATGGGAAATCAGATTTCGGTCTAGGTTGTTCTAAGGGTGGAGGCATATATGCAACCGGGCAAGGCAAACCAA AGAAGGGGAGAGGCGCACTAAGGGATGTCAAGAGAATCAAAGCTTCACCAGACCCTGACTTTGACTATGATGATGATCCGGATATGATGATGTCTGTAAA ACAACATCTCGATTTGAAATGGGAGAATGCAGAGATTCCTCCAATTCATCCAATCCATAAACCCTCTTCTCCAACACCTCCACATCCAAAAACACCTCTG CATCACCGCTACCTACACCATTCCCAAACGCTGTCGCTAATCTCTGATACCTCACCAGCCGCCCTTCCCAGTCTACCAGAAATGCTCCGAGATATTTGTT CCCCAATTACATCGAAATCCCTTGATACGCTACAAACATGTGGAGGTTGTCATCATTCTTACCCTCAATTCCTTCCAACCGAGGGAAGTTTCTCAAAGTC CTTCCCCCCCATAAGTAGGAAATCAGGAAGATTGGAAGTAAGAGGTCGTCGGAGCAAAGGATTTCTCAAGAACCTTGAACCGGATCCCCGATGTTGGCTC GCGATCGATCACGTGGATTTTTCCGGCTATGTTTTCGACGATTACGCTTATCTTTGCACCTTGCAATCTAGGAGGAATGTCAGTAGGATTCACGAGGGTT CTCGTTTTGGGACAAAGTTCGAATACATATGCGCCTCGAGATTGGGGATCTTCGCCGCCGACCAAATTGAGTTTGGAGTCTAA
AA sequence Show only first row Show all	>Lus10033887 pacid=23172807 polypeptide=Lus10033887 locus=Lus10033887.g ID=Lus10033887.BGIv1.0 annot-version=v1.0 MLVRPVGQRGASANPSAIISALLSKRAKLHEELRTIEKQVYDMETNYLQDPSQCGNVVKGFEGFLSSTKNTALLKRSRKFQPEDRLFSLSSVTSPAVCTL STQTVTFYSYGKSDFGLGCSKGGGIYATGQGKPKKGRGALRDVKRIKASPDPDFDYDDDPDMMMSVKQHLDLKWENAEIPPIHPIHKPSSPTPPHPKTPL HHRYLHHSQTLSLISDTSPAALPSLPEMLRDICSPITSKSLDTLQTCGGCHHSYPQFLPTEGSFSKSFPPISRKSGRLEVRGRRSKGFLKNLEPDPRCWL AIDHVDFSGYVFDDYAYLCTLQSRRNVSRIHEGSRFGTKFEYICASRLGIFAADQIEFGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14385			unknown protein		Lus10033887 [exp]	0	1
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	5.8	0.7939
					Lus10007207 [exp]	6.3	0.7814
AT4G11900			S-locus lectin protein kinase ...		Lus10041639 [exp]	12.1	0.7416
AT5G64680			unknown protein		Lus10011265 [exp]	27.7	0.7792
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	39.8	0.7577
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	42.2	0.7730
AT4G20330			Transcription initiation facto...		Lus10005100 [exp]	50.6	0.7361
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	64.4	0.7636
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10000734 [exp]	70.4	0.7289
AT1G10890			unknown protein		Lus10043141 [exp]	86.1	0.7529

Compare expression of checked genes

Lus10033887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.